RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 U3KQK5 164 aa7.55□□□□□ -1.2
SYNE1-203ENST00000354674 PRSS2P07478 247 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 GPHB5Q86YW7 130 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 BAALCQ8WXS3 180 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 OTORQ9NRC9 128 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 F8VRH5 84 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 LINC01620Q4KN68 170 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 PRR25Q96S07 402 aa7.54□□□□□ -1.2
SYNE1-203ENST00000354674 LAGE3Q14657 143 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 SETXQ7Z333 2677 aaKnown RBP7.53□□□□□ -1.2
SYNE1-203ENST00000354674 BUB3O43684 328 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 UNQ9165/PRO28630Q6UXU0 137 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 C4orf3Q8WVX3 66 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 TMEM190Q8WZ59 177 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 NF1P21359 2839 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 TRAV8-3A0A0A6YYJ7 113 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 PLNP26678 52 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 C3orf22Q8N5N4 141 aa7.53□□□□□ -1.2
SYNE1-203ENST00000354674 FN1P02751 2386 aaKnown RBP7.52□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3OR16-13A0A075B7E8 117 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3-74A0A0B4J1X5 117 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 K7EMT4 169 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 LGALS9O00182 355 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 OXTP01178 125 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 PROK1P58294 105 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 CIRBPQ14011 172 aaKnown RBP7.52□□□□□ -1.21
SYNE1-203ENST00000354674 TRAV13-1A0A0B4J241 112 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 TSPEAR-AS2P59090 65 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 METTL26Q96S19 204 aa7.52□□□□□ -1.21
SYNE1-203ENST00000354674 EIF4EBP3O60516 100 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-203ENST00000354674 SMAD5-AS1Q9Y6J3 95 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 MTORP42345 2549 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV4OR15-8A0A075B7B6 117 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 A0A087WW49 117 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 A0A0J9YY99 117 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 C18orf65Q6ZTR6 163 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 TRBV19A0A075B6N1 114 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 SBSPONQ8IVN8 264 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 RNF182Q8N6D2 247 aa7.51□□□□□ -1.21
SYNE1-203ENST00000354674 A0A0U1RQV1 116 aa7.5□□□□□ -1.21
SYNE1-203ENST00000354674 CD28P10747 220 aa7.5□□□□□ -1.21
SYNE1-203ENST00000354674 RPL35AP18077 110 aaKnown RBP7.5□□□□□ -1.21
SYNE1-203ENST00000354674 PDE6HQ13956 83 aa7.5□□□□□ -1.21
SYNE1-203ENST00000354674 Q8N8P6 123 aa7.5□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3-66A0A0C4DH42 116 aa7.5□□□□□ -1.21
SYNE1-203ENST00000354674 LYPD1Q8N2G4 141 aa7.5□□□□□ -1.21
SYNE1-203ENST00000354674 RPL39LQ96EH5 51 aaKnown RBP7.5□□□□□ -1.21
SYNE1-203ENST00000354674 DAZ1Q9NQZ3 744 aaKnown RBP7.5□□□□□ -1.21
SYNE1-203ENST00000354674 C11orf86A6NJI1 115 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 Q6Q795 121 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 SIGLEC15Q6ZMC9 328 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV7-4-1A0A0J9YVY3 117 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3-30P01768 117 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3-30-5P0DP03 117 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 HOXD3P31249 432 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-203ENST00000354674 MUSTN1Q8IVN3 82 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 LINC01619G3V211 115 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 TRIAP1O43715 76 aa7.49□□□□□ -1.21
SYNE1-203ENST00000354674 M0R381 172 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3-33P01772 117 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 ATXN8Q156A1 80 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 MGPP08493 103 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 RHOHQ15669 191 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 SPANXN1Q5VSR9 72 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 SMCR5Q8TEV8 140 aa7.48□□□□□ -1.21
SYNE1-203ENST00000354674 CITED2Q99967 270 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-203ENST00000354674 H7C423 109 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 KRTAP10-3P60369 221 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 SORL1Q92673 2214 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 IGHV3-49A0A0A0MS15 119 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 DEFB136Q30KP8 78 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 OPRPNQ99935 248 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-203ENST00000354674 F8P00451 2351 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 M0R2P5 195 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 UQCRQO14949 82 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 FAM19A4Q96LR4 140 aa7.47□□□□□ -1.21
SYNE1-203ENST00000354674 SYNJ2BPP57105 145 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 RPL39P62891 51 aaKnown RBP7.46□□□□□ -1.22
SYNE1-203ENST00000354674 C2orf66Q6UXQ4 117 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 POM121L12Q8N7R1 296 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 RHPN1-AS1Q9BWJ2 59 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 IGLV2-18A0A075B6J9 118 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 A0A0U1RRA0 63 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 SLURP1P55000 103 aa7.46□□□□□ -1.22
SYNE1-203ENST00000354674 TRACP01848 142 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 HIST2H2BDQ6DRA6 164 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 A0A087WVE0 104 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 IGKV3D-7A0A0C4DH55 119 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 TRBV10-2A0A0K0K1G8 114 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 PRAC2D3DTV9 90 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 KHDC1LQ5JSQ8 128 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 SDIM1Q6ZPB5 146 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-203ENST00000354674 DAND5Q8N907 189 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 SOCS3O14543 225 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 RPL13AP40429 203 aaKnown RBP7.45□□□□□ -1.22
SYNE1-203ENST00000354674 C11orf44Q8N8P7 122 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 NEXN-AS1Q8NBZ9 246 aa7.45□□□□□ -1.22
SYNE1-203ENST00000354674 SLC50A1Q9BRV3 221 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms