RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FAM222AQ5U5X8 452 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 CTSGP08311 255 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 RBX1P62877 108 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 CCL24O00175 119 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 CHD8Q9HCK8 2581 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 IGKV2D-26A0A0A0MRZ7 120 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 KRTAP27-1Q3LI81 207 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 ZNRD1Q9P1U0 126 aa11.01□□□□□ -0.65
COL7A1-201ENST00000328333 GPHB5Q86YW7 130 aa11□□□□□ -0.65
COL7A1-201ENST00000328333 C9orf66Q5T8R8 295 aa11□□□□□ -0.65
COL7A1-201ENST00000328333 Q6ZQT7 251 aa11□□□□□ -0.65
COL7A1-201ENST00000328333 CEP295Q9C0D2 2601 aa11□□□□□ -0.65
COL7A1-201ENST00000328333 A0A0U1RQV1 116 aa10.99□□□□□ -0.65
COL7A1-201ENST00000328333 GATA1P15976 413 aaPredicted RBP10.99□□□□□ -0.65
COL7A1-201ENST00000328333 C17orf77Q96MU5 243 aa10.99□□□□□ -0.65
COL7A1-201ENST00000328333 SERP1Q9Y6X1 66 aa10.99□□□□□ -0.65
COL7A1-201ENST00000328333 PIK3CD-AS1Q5SR53 167 aa10.99□□□□□ -0.65
COL7A1-201ENST00000328333 SMIM26A0A096LP01 95 aa10.99□□□□□ -0.65
COL7A1-201ENST00000328333 PRB2P02812 416 aaPredicted RBP10.99□□□□□ -0.65
COL7A1-201ENST00000328333 NEXN-AS1Q8NBZ9 246 aa10.98□□□□□ -0.65
COL7A1-201ENST00000328333 ASPHD1Q5U4P2 390 aa10.98□□□□□ -0.65
COL7A1-201ENST00000328333 Q6ZSR3 168 aa10.98□□□□□ -0.65
COL7A1-201ENST00000328333 ENHOQ6UWT2 76 aa10.98□□□□□ -0.65
COL7A1-201ENST00000328333 IGLV10-54A0A075B6I4 117 aa10.96□□□□□ -0.65
COL7A1-201ENST00000328333 IGHV7-81A0A0B4J1V7 117 aa10.96□□□□□ -0.65
COL7A1-201ENST00000328333 RSPO1Q2MKA7 263 aaPredicted RBP10.96□□□□□ -0.65
COL7A1-201ENST00000328333 COX17Q14061 63 aa10.96□□□□□ -0.66
COL7A1-201ENST00000328333 CENPVL3A0A0U1RRI6 287 aa10.95□□□□□ -0.66
COL7A1-201ENST00000328333 U3KQK5 164 aa10.95□□□□□ -0.66
COL7A1-201ENST00000328333 NCR3O14931 201 aa10.95□□□□□ -0.66
COL7A1-201ENST00000328333 NFE4Q86UQ8 179 aa10.95□□□□□ -0.66
COL7A1-201ENST00000328333 RNF223E7ERA6 249 aa10.94□□□□□ -0.66
COL7A1-201ENST00000328333 LY6DQ14210 128 aa10.94□□□□□ -0.66
COL7A1-201ENST00000328333 TRIAP1O43715 76 aa10.94□□□□□ -0.66
COL7A1-201ENST00000328333 C4orf3Q8WVX3 66 aa10.94□□□□□ -0.66
COL7A1-201ENST00000328333 LY6HO94772 140 aa10.93□□□□□ -0.66
COL7A1-201ENST00000328333 Q9HAA7 133 aa10.93□□□□□ -0.66
COL7A1-201ENST00000328333 INSL3P51460 131 aa10.93□□□□□ -0.66
COL7A1-201ENST00000328333 ZFAND2AQ8N6M9 145 aa10.93□□□□□ -0.66
COL7A1-201ENST00000328333 DHRS4-AS1Q9P1J3 65 aa10.93□□□□□ -0.66
COL7A1-201ENST00000328333 FASNP49327 2511 aaKnown RBP10.93□□□□□ -0.66
COL7A1-201ENST00000328333 CFAP126Q5VTH2 177 aa10.92□□□□□ -0.66
COL7A1-201ENST00000328333 TMEM105Q8N8V8 129 aa10.92□□□□□ -0.66
COL7A1-201ENST00000328333 C5orf56Q8N8D9 126 aa10.92□□□□□ -0.66
COL7A1-201ENST00000328333 MSRB1Q9NZV6 116 aa10.92□□□□□ -0.66
COL7A1-201ENST00000328333 A0A096LPF7 62 aa10.91□□□□□ -0.66
COL7A1-201ENST00000328333 LST1O00453 97 aa10.91□□□□□ -0.66
COL7A1-201ENST00000328333 LOXL1Q08397 574 aaPredicted RBP10.91□□□□□ -0.66
COL7A1-201ENST00000328333 K7ENP7 123 aa10.91□□□□□ -0.66
COL7A1-201ENST00000328333 LINC00308Q8TCZ7 52 aa10.91□□□□□ -0.66
COL7A1-201ENST00000328333 C11orf53Q8IXP5 236 aa10.91□□□□□ -0.66
COL7A1-201ENST00000328333 A0A0J9YY99 117 aa10.9□□□□□ -0.66
COL7A1-201ENST00000328333 TMEM223A0PJW6 202 aa10.9□□□□□ -0.66
COL7A1-201ENST00000328333 PATE2Q6UY27 113 aa10.9□□□□□ -0.67
COL7A1-201ENST00000328333 IGHV4OR15-8A0A075B7B6 117 aa10.9□□□□□ -0.67
COL7A1-201ENST00000328333 A0A087WW49 117 aa10.9□□□□□ -0.67
COL7A1-201ENST00000328333 IGHV3-33P01772 117 aa10.9□□□□□ -0.67
COL7A1-201ENST00000328333 Q6JHZ5 121 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 PROK2Q9HC23 129 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 PRO0255Q9UI72 69 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 A0A0J9YX75 114 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 PMAIP1Q13794 54 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 Q8N9L7 120 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 C11orf1Q9H5F2 150 aa10.89□□□□□ -0.67
COL7A1-201ENST00000328333 SMIM9A6NGZ8 99 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 PYGO1Q9Y3Y4 419 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 CCKP06307 115 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 IGHV3-30P01768 117 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 IGHV3-30-5P0DP03 117 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 NRACQ8N912 160 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 P0C879 139 aa10.88□□□□□ -0.67
COL7A1-201ENST00000328333 TRAV7A0A075B6U4 112 aa10.87□□□□□ -0.67
COL7A1-201ENST00000328333 DIAPH2-AS1Q14236 149 aa10.87□□□□□ -0.67
COL7A1-201ENST00000328333 LINC00574Q9H8X3 128 aa10.87□□□□□ -0.67
COL7A1-201ENST00000328333 MIFP14174 115 aa10.87□□□□□ -0.67
COL7A1-201ENST00000328333 UBE2D2P62837 147 aa10.87□□□□□ -0.67
COL7A1-201ENST00000328333 IGLV2-23P01705 113 aa10.87□□□□□ -0.67
COL7A1-201ENST00000328333 EIF4EBP1Q13541 118 aaPredicted RBP10.87□□□□□ -0.67
COL7A1-201ENST00000328333 RNF138Q8WVD3 245 aa10.86□□□□□ -0.67
COL7A1-201ENST00000328333 Q96MF0 132 aa10.86□□□□□ -0.67
COL7A1-201ENST00000328333 ZNF706Q9Y5V0 76 aaPredicted RBP10.86□□□□□ -0.67
COL7A1-201ENST00000328333 IL17DQ8TAD2 202 aa10.86□□□□□ -0.67
COL7A1-201ENST00000328333 ZNF503-AS2A6NEH8 195 aa10.86□□□□□ -0.67
COL7A1-201ENST00000328333 ARTNQ5T4W7 220 aa10.86□□□□□ -0.67
COL7A1-201ENST00000328333 LINC00526Q96FQ7 95 aa10.86□□□□□ -0.67
COL7A1-201ENST00000328333 WFDC11Q8NEX6 87 aa10.85□□□□□ -0.67
COL7A1-201ENST00000328333 TTTY13Q9BZ97 58 aa10.85□□□□□ -0.67
COL7A1-201ENST00000328333 AJUBAQ96IF1 538 aa10.85□□□□□ -0.67
COL7A1-201ENST00000328333 IGLV2-14P01704 120 aa10.85□□□□□ -0.67
COL7A1-201ENST00000328333 MLST8Q9BVC4 326 aa10.85□□□□□ -0.67
COL7A1-201ENST00000328333 FAM215AQ9Y5M1 114 aa10.84□□□□□ -0.67
COL7A1-201ENST00000328333 M0QXV9 152 aa10.84□□□□□ -0.67
COL7A1-201ENST00000328333 LYPD6Q86Y78 171 aa10.84□□□□□ -0.67
COL7A1-201ENST00000328333 TRBV27A0A0K0K1C4 114 aa10.83□□□□□ -0.68
COL7A1-201ENST00000328333 PLA2G2EQ9NZK7 142 aa10.83□□□□□ -0.68
COL7A1-201ENST00000328333 SLURP1P55000 103 aa10.83□□□□□ -0.68
COL7A1-201ENST00000328333 REG3AQ06141 175 aa10.82□□□□□ -0.68
COL7A1-201ENST00000328333 KLK5Q9Y337 293 aaPredicted RBP10.82□□□□□ -0.68
COL7A1-201ENST00000328333 CCDC179H3BU77 68 aa10.82□□□□□ -0.68
COL7A1-201ENST00000328333 WFDC10BQ8IUB3 73 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms