RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SPINT4Q6UDR6 99 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 A0A0J9YXV3 536 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 DNAJC9-AS1A6NH13 148 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 LINC00322Q6ZN03 302 aaPredicted RBP4.91□□□□□ -1.62
VPS35-201ENST00000299138 SIRPDQ9H106 197 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 UBE2D3P61077 147 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 UBE2D2P62837 147 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 FAM19A3Q7Z5A8 133 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 SBSPONQ8IVN8 264 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 VPREB3Q9UKI3 123 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 INTS1Q8N201 2190 aaKnown RBP4.9□□□□□ -1.62
VPS35-201ENST00000299138 WFDC13Q8IUB5 93 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 NEXN-AS1Q8NBZ9 246 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 LY6LH3BQJ8 138 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 ZNF672Q499Z4 452 aaPredicted RBP4.9□□□□□ -1.62
VPS35-201ENST00000299138 PRSS33Q8NF86 280 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 C9orf85Q96MD7 179 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 FAM215AQ9Y5M1 114 aa4.9□□□□□ -1.62
VPS35-201ENST00000299138 BRD3OSQ6XYD6 125 aa4.9□□□□□ -1.63
VPS35-201ENST00000299138 NDUFA11Q86Y39 141 aa4.9□□□□□ -1.63
VPS35-201ENST00000299138 MRPL36Q9P0J6 103 aaKnown RBP4.9□□□□□ -1.63
VPS35-201ENST00000299138 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.89□□□□□ -1.63
VPS35-201ENST00000299138 SHISA2Q6UWI4 295 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 ODF3BA8MYP8 253 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 C1orf158Q8N1D5 194 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 A0A0C4DFX4 3053 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 AKAP6Q13023 2319 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 ABCA1O95477 2261 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 C3orf84H3BNL1 204 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 CRIP2P52943 208 aaPredicted RBP4.89□□□□□ -1.63
VPS35-201ENST00000299138 NFE4Q86UQ8 179 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 TMEM263Q8WUH6 116 aaKnown RBP4.89□□□□□ -1.63
VPS35-201ENST00000299138 K7EMT4 169 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 IGHV3-30P01768 117 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 IGHV3-33P01772 117 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 IGHV3-30-3P0DP02 117 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 IGHV3-30-5P0DP03 117 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 MIR7-3HGQ8N6C7 128 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 NOP10Q9NPE3 64 aaKnown RBP4.89□□□□□ -1.63
VPS35-201ENST00000299138 FER1L5A0AVI2 2057 aa4.89□□□□□ -1.63
VPS35-201ENST00000299138 PCNX2A6NKB5 2137 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 MIFP14174 115 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 PDE6GP18545 87 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 RNF185Q96GF1 192 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 H3BUX3 64 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 RPL39P62891 51 aaKnown RBP4.88□□□□□ -1.63
VPS35-201ENST00000299138 PYGO1Q9Y3Y4 419 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 TRBV30A0A0K0K1B3 111 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 COX7BP24311 80 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 DIAPH2-AS1Q14236 149 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 C22orf34Q6ZV56 151 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 ZNF407Q9C0G0 2248 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 A0A1W2PNU3 283 aaPredicted RBP4.88□□□□□ -1.63
VPS35-201ENST00000299138 KLK5Q9Y337 293 aaPredicted RBP4.88□□□□□ -1.63
VPS35-201ENST00000299138 DYSFO75923 2080 aa4.88□□□□□ -1.63
VPS35-201ENST00000299138 PTPRZ1P23471 2315 aaPredicted RBP4.87□□□□□ -1.63
VPS35-201ENST00000299138 C1orf229Q6ZS94 237 aaPredicted RBP4.87□□□□□ -1.63
VPS35-201ENST00000299138 Q8N6K4 173 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 MDFIQ99750 246 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 SVILO95425 2214 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 SDK2Q58EX2 2172 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 GATA3P23771 443 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 ZNRD1Q9P1U0 126 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 RP1L1Q8IWN7 2480 aaPredicted RBP4.87□□□□□ -1.63
VPS35-201ENST00000299138 MDFICQ9P1T7 246 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 RANBP2P49792 3224 aaKnown RBP4.87□□□□□ -1.63
VPS35-201ENST00000299138 IGLV2-18A0A075B6J9 118 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 J3QLI3 93 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 CTSZQ9UBR2 303 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 X6R8D5 127 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 TECTAO75443 2155 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 A8MZ25 164 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 ATP5EP2Q5VTU8 51 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 PRO0628Q9UI54 55 aa4.87□□□□□ -1.63
VPS35-201ENST00000299138 CELA1Q9UNI1 258 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 XIRP2A4UGR9 3374 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 PRO0461Q9UI25 63 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 RNASE3P12724 160 aaKnown RBP4.86□□□□□ -1.63
VPS35-201ENST00000299138 XGP55808 180 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 LY6DQ14210 128 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 MSMPQ1L6U9 139 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 SPAG11AQ6PDA7 123 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 NRACQ8N912 160 aa4.86□□□□□ -1.63
VPS35-201ENST00000299138 CRIP1P50238 77 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 CEP250Q9BV73 2442 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 TRBV7-6A0A0J9YX20 115 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 MRPS36P82909 103 aaKnown RBP4.85□□□□□ -1.63
VPS35-201ENST00000299138 IGHV1-58A0A0C4DH39 117 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 CRYGAP11844 174 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 ZNF706Q9Y5V0 76 aaPredicted RBP4.85□□□□□ -1.63
VPS35-201ENST00000299138 ADAMTS20P59510 1910 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 IGF1P05019 195 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 HIGD2AQ9BW72 106 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 PRORYQ9H606 182 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 TPSG1Q9NRR2 321 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 B9D2Q9BPU9 175 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 ESM1Q9NQ30 184 aa4.85□□□□□ -1.63
VPS35-201ENST00000299138 EP300Q09472 2414 aaPredicted RBP4.84□□□□□ -1.63
VPS35-201ENST00000299138 SPINK6Q6UWN8 80 aa4.84□□□□□ -1.63
VPS35-201ENST00000299138 Q6ZVQ6 151 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms