RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 MED13LQ71F56 2210 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 TMEM223A0PJW6 202 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 RBM3P98179 157 aaKnown RBP9.58□□□□□ -0.88
PTCD1-201ENST00000292478 HIST2H2BDQ6DRA6 164 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 CLEC2BQ92478 149 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 RS1O15537 224 aa9.57□□□□□ -0.88
PTCD1-201ENST00000292478 PSMB8P28062 276 aa9.57□□□□□ -0.88
PTCD1-201ENST00000292478 IL17DQ8TAD2 202 aa9.57□□□□□ -0.88
PTCD1-201ENST00000292478 M0QY20 66 aa9.57□□□□□ -0.88
PTCD1-201ENST00000292478 CEMP1Q6PRD7 247 aaPredicted RBP9.57□□□□□ -0.88
PTCD1-201ENST00000292478 PYGO1Q9Y3Y4 419 aa9.57□□□□□ -0.88
PTCD1-201ENST00000292478 IGLV4-3A0A075B6K6 122 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 TRBV6-4A0A1B0GX49 114 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 C14orf177Q52M58 125 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 Q6ZSV7 163 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 DEFB4AO15263 64 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 P0DMU3 169 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 FAM231AP0DMU4 169 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 FAM231CP0DMU5 169 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 LINC00467Q9BRT7 94 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 PLCE1Q9P212 2302 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 CFAP126Q5VTH2 177 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 RNASE8Q8TDE3 154 aaKnown RBP9.56□□□□□ -0.88
PTCD1-201ENST00000292478 ZNF22P17026 224 aaPredicted RBP9.56□□□□□ -0.88
PTCD1-201ENST00000292478 COX7BP24311 80 aa9.56□□□□□ -0.88
PTCD1-201ENST00000292478 TRBV27A0A0K0K1C4 114 aa9.55□□□□□ -0.88
PTCD1-201ENST00000292478 REG3AQ06141 175 aa9.55□□□□□ -0.88
PTCD1-201ENST00000292478 NOTCH2Q04721 2471 aa9.55□□□□□ -0.88
PTCD1-201ENST00000292478 UBE2AP49459 152 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 MUC6Q6W4X9 2439 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 CEP192Q8TEP8 1941 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 TCL1BO95988 128 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 C11orf45Q8TAV5 145 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 IBA57-AS1B1ANH7 110 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 FAM222AQ5U5X8 452 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 ZNF702PQ9H963 129 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 MED12LQ86YW9 2145 aa9.54□□□□□ -0.88
PTCD1-201ENST00000292478 MIFP14174 115 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 WFDC11Q8NEX6 87 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 PCNX3Q9H6A9 2034 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 IGKV3D-7A0A0C4DH55 119 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 A0A1B0GX51 115 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 IGLV1-40P01703 118 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 MP68P56378 58 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 HIGD2BQ4VC39 106 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 TRAV26-1A0A087WT03 109 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 LINC00643Q86TS7 51 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 FAM236AA0A1B0GUQ0 79 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 FAM236BA0A1B0GV22 79 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 B5MCH6 92 aa9.53□□□□□ -0.88
PTCD1-201ENST00000292478 LINC00269Q8N2A0 174 aa9.52□□□□□ -0.88
PTCD1-201ENST00000292478 CDKN2A-AS1Q9UH64 79 aa9.52□□□□□ -0.88
PTCD1-201ENST00000292478 KLLNB2CW77 178 aa9.52□□□□□ -0.89
PTCD1-201ENST00000292478 PIK3CD-AS1Q5SR53 167 aa9.52□□□□□ -0.89
PTCD1-201ENST00000292478 CHCHD10Q8WYQ3 142 aaPredicted RBP9.52□□□□□ -0.89
PTCD1-201ENST00000292478 ANKHD1Q8IWZ3 2542 aaKnown RBP9.52□□□□□ -0.89
PTCD1-201ENST00000292478 TRBV6-8A0A0A6YYG3 113 aa9.51□□□□□ -0.89
PTCD1-201ENST00000292478 TIMM17BO60830 172 aa9.51□□□□□ -0.89
PTCD1-201ENST00000292478 DOPEY1Q5JWR5 2465 aa9.51□□□□□ -0.89
PTCD1-201ENST00000292478 TNRC6BQ9UPQ9 1833 aaKnown RBP9.51□□□□□ -0.89
PTCD1-201ENST00000292478 LRP4O75096 1905 aa9.51□□□□□ -0.89
PTCD1-201ENST00000292478 NACAE9PAV3 2078 aa9.51□□□□□ -0.89
PTCD1-201ENST00000292478 NRACQ8N912 160 aa9.5□□□□□ -0.89
PTCD1-201ENST00000292478 ZNF843Q8N446 348 aa9.5□□□□□ -0.89
PTCD1-201ENST00000292478 RNASE3P12724 160 aaKnown RBP9.5□□□□□ -0.89
PTCD1-201ENST00000292478 CNFNQ9BYD5 112 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 LINC00308Q8TCZ7 52 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 C9orf85Q96MD7 179 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 TP73-AS1Q9UF72 201 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 IGHV4-28A0A0C4DH34 117 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 TRBV30A0A0K0K1B3 111 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 C5orf47Q569G3 176 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 ARHGAP21Q5T5U3 1957 aa9.49□□□□□ -0.89
PTCD1-201ENST00000292478 HILS1P60008 231 aa9.48□□□□□ -0.89
PTCD1-201ENST00000292478 SEC61GP60059 68 aa9.48□□□□□ -0.89
PTCD1-201ENST00000292478 SHISA2Q6UWI4 295 aa9.48□□□□□ -0.89
PTCD1-201ENST00000292478 PTPRQQ9UMZ3 2332 aa9.48□□□□□ -0.89
PTCD1-201ENST00000292478 B9D2Q9BPU9 175 aa9.48□□□□□ -0.89
PTCD1-201ENST00000292478 FAM208BQ5VWN6 2430 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 MRPS36P82909 103 aaKnown RBP9.47□□□□□ -0.89
PTCD1-201ENST00000292478 TSHBP01222 138 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 PTH2Q96A98 100 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 WNK1Q9H4A3 2382 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 MRGPRG-AS1Q2M3A8 158 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 MAPKAPK5-AS1Q8N8E1 139 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 SPATA25Q9BR10 227 aa9.47□□□□□ -0.89
PTCD1-201ENST00000292478 CRIP2P52943 208 aaPredicted RBP9.46□□□□□ -0.89
PTCD1-201ENST00000292478 POLR2KP53803 58 aaKnown RBP9.46□□□□□ -0.89
PTCD1-201ENST00000292478 IGKV2D-26A0A0A0MRZ7 120 aa9.46□□□□□ -0.89
PTCD1-201ENST00000292478 C10orf99Q6UWK7 81 aa9.46□□□□□ -0.89
PTCD1-201ENST00000292478 DCANP1Q8TF63 244 aa9.46□□□□□ -0.9
PTCD1-201ENST00000292478 C14orf132Q9NPU4 83 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 C11orf21Q9P2W6 132 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 DEFB131BA0A096LNP1 70 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 ATP5EP2Q5VTU8 51 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 PRR9Q5T870 116 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 KIR2DL5BQ8NHK3 375 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 BRI3O95415 125 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 SS18L2Q9UHA2 77 aa9.45□□□□□ -0.9
PTCD1-201ENST00000292478 TTC28Q96AY4 2481 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms