RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 P01737 135 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 IQCJQ1A5X6 159 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 KRTAP26-1Q6PEX3 210 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 TCTE3Q8IZS6 198 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 LINC00269Q8N2A0 174 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 C9orf62Q8N4C0 152 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 CIRBP-AS1Q8TBR5 109 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 CTDSP1Q9GZU7 261 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 MED9Q9NWA0 146 aa6.32□□□□□ -1.4
VPS41-201ENST00000265745 USP17L23D6RBM5 183 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 IFNA1P01562 189 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 MGPP08493 103 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 BCL2P10415 239 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 GAGE6Q13070 117 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 SUMO4Q6EEV6 95 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 LYZL1Q6UWQ5 148 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 SLC51BQ86UW2 128 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 BIN3Q9NQY0 253 aa6.31□□□□□ -1.4
VPS41-201ENST00000265745 IGHV1-24A0A0C4DH33 117 aa6.3□□□□□ -1.4
VPS41-201ENST00000265745 PRSS1P07477 247 aa6.3□□□□□ -1.4
VPS41-201ENST00000265745 NTF3P20783 257 aa6.3□□□□□ -1.4
VPS41-201ENST00000265745 NKX2-5P52952 324 aaPredicted RBP6.3□□□□□ -1.4
VPS41-201ENST00000265745 WDR73Q6P4I2 378 aa6.3□□□□□ -1.4
VPS41-201ENST00000265745 RASL11AQ6T310 242 aa6.3□□□□□ -1.4
VPS41-201ENST00000265745 DEFB104AQ8WTQ1 72 aa6.3□□□□□ -1.4
VPS41-201ENST00000265745 A0A1B0GUV1 79 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 HLA-DQA1P01909 254 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 TRGC1P0CF51 173 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 TAGLN2P37802 199 aaKnown RBP6.29□□□□□ -1.4
VPS41-201ENST00000265745 KRTAP10-4P60372 401 aaPredicted RBP6.29□□□□□ -1.4
VPS41-201ENST00000265745 CLPSL2Q6UWE3 100 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 C20orf203Q8NBC4 194 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 CNFNQ9BYD5 112 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 DPH3P1Q9H4G8 78 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 NIT2Q9NQR4 276 aa6.29□□□□□ -1.4
VPS41-201ENST00000265745 GAGE10A6NGK3 116 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 KRTAP29-1A8MX34 341 aaPredicted RBP6.28□□□□□ -1.4
VPS41-201ENST00000265745 K7EN84 100 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 CTRLP40313 264 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 REG3AQ06141 175 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 C9orf163Q8N9P6 203 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 OCC1Q8TAD7 63 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 PGLYRP4Q96LB8 373 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 TMEM243Q9BU79 118 aa6.28□□□□□ -1.4
VPS41-201ENST00000265745 IGLV4-60A0A075B6I1 120 aa6.27□□□□□ -1.41
VPS41-201ENST00000265745 TRAV8-4A0A0B4J246 113 aa6.27□□□□□ -1.41
VPS41-201ENST00000265745 TWIST1Q15672 202 aa6.27□□□□□ -1.41
VPS41-201ENST00000265745 Q6ZNX1 250 aa6.27□□□□□ -1.41
VPS41-201ENST00000265745 GFRA4Q9GZZ7 299 aa6.27□□□□□ -1.41
VPS41-201ENST00000265745 RNASE7Q9H1E1 156 aaKnown RBP6.27□□□□□ -1.41
VPS41-201ENST00000265745 RPP21Q9H633 154 aaKnown RBP6.27□□□□□ -1.41
VPS41-201ENST00000265745 IGLV10-54A0A075B6I4 117 aa6.26□□□□□ -1.41
VPS41-201ENST00000265745 SDIM1Q6ZPB5 146 aa6.26□□□□□ -1.41
VPS41-201ENST00000265745 GATD1Q8NB37 220 aa6.26□□□□□ -1.41
VPS41-201ENST00000265745 GTSF1Q8WW33 167 aa6.26□□□□□ -1.41
VPS41-201ENST00000265745 TMEM250H0YL14 139 aa6.25□□□□□ -1.41
VPS41-201ENST00000265745 AMTP48728 403 aa6.25□□□□□ -1.41
VPS41-201ENST00000265745 FOXA3P55318 350 aaPredicted RBP6.25□□□□□ -1.41
VPS41-201ENST00000265745 COTL1Q14019 142 aa6.25□□□□□ -1.41
VPS41-201ENST00000265745 LYPD6BQ8NI32 183 aa6.25□□□□□ -1.41
VPS41-201ENST00000265745 TRAV26-2A0A0B4J265 109 aa6.24□□□□□ -1.41
VPS41-201ENST00000265745 PANO1I0J062 215 aa6.24□□□□□ -1.41
VPS41-201ENST00000265745 CNBPP62633 177 aaKnown RBP6.24□□□□□ -1.41
VPS41-201ENST00000265745 BLOC1S1P78537 153 aa6.24□□□□□ -1.41
VPS41-201ENST00000265745 hDV102S1A0JD36 115 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 UBE2L6O14933 153 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 SLPIP03973 132 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 NPSP0C0P6 89 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 ALKAL2Q6UX46 152 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 FAM231DQ6ZW35 169 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 AKAP14Q86UN6 197 aa6.23□□□□□ -1.41
VPS41-201ENST00000265745 RPL39LQ96EH5 51 aaKnown RBP6.23□□□□□ -1.41
VPS41-201ENST00000265745 LRP1Q07954 4544 aaKnown RBP6.22□□□□□ -1.41
VPS41-201ENST00000265745 A8MWL6 223 aa6.22□□□□□ -1.41
VPS41-201ENST00000265745 PRYO14603 147 aa6.22□□□□□ -1.41
VPS41-201ENST00000265745 GATCO43716 136 aaKnown RBP6.22□□□□□ -1.41
VPS41-201ENST00000265745 NCR2O95944 276 aa6.22□□□□□ -1.41
VPS41-201ENST00000265745 OXTP01178 125 aa6.22□□□□□ -1.41
VPS41-201ENST00000265745 RPL37AP61513 92 aaKnown RBP6.22□□□□□ -1.41
VPS41-201ENST00000265745 CIRBPQ14011 172 aaKnown RBP6.22□□□□□ -1.41
VPS41-201ENST00000265745 TEX261Q6UWH6 196 aa6.22□□□□□ -1.41
VPS41-201ENST00000265745 SMIM15Q7Z3B0 74 aa6.22□□□□□ -1.41
VPS41-201ENST00000265745 H7C423 109 aa6.21□□□□□ -1.42
VPS41-201ENST00000265745 IGHV3-64A0A075B6Q5 118 aa6.2□□□□□ -1.42
VPS41-201ENST00000265745 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.2□□□□□ -1.42
VPS41-201ENST00000265745 IGKV3OR2-268A0A0C4DH90 116 aa6.2□□□□□ -1.42
VPS41-201ENST00000265745 TRBV6-5A0A0K0K1A5 114 aa6.2□□□□□ -1.42
VPS41-201ENST00000265745 FAM231BA6NCW3 169 aa6.2□□□□□ -1.42
VPS41-201ENST00000265745 SDHAF1A6NFY7 115 aa6.2□□□□□ -1.42
VPS41-201ENST00000265745 NDUFS6O75380 124 aaKnown RBP6.2□□□□□ -1.42
VPS41-201ENST00000265745 AMMECR1LQ6DCA0 310 aa6.2□□□□□ -1.42
VPS41-201ENST00000265745 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.19□□□□□ -1.42
VPS41-201ENST00000265745 IGKV2-29A2NJV5 120 aaPredicted RBP6.19□□□□□ -1.42
VPS41-201ENST00000265745 I3L3M4 83 aa6.19□□□□□ -1.42
VPS41-201ENST00000265745 GAS8-AS1O95177 125 aa6.19□□□□□ -1.42
VPS41-201ENST00000265745 FGF6P10767 208 aa6.19□□□□□ -1.42
VPS41-201ENST00000265745 HNRNPA3P51991 378 aaKnown RBP6.19□□□□□ -1.42
VPS41-201ENST00000265745 CEBPGP53567 150 aa6.19□□□□□ -1.42
VPS41-201ENST00000265745 LINC01551Q86U37 167 aa6.19□□□□□ -1.42
VPS41-201ENST00000265745 C15orf56Q8N910 161 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms