RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 TRIAP1O43715 76 aa10.27□□□□□ -0.76
USH1C-201ENST00000005226 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.27□□□□□ -0.77
USH1C-201ENST00000005226 TEX49A0A1B0GTD5 131 aa10.27□□□□□ -0.77
USH1C-201ENST00000005226 IGKV2-29A2NJV5 120 aaPredicted RBP10.27□□□□□ -0.77
USH1C-201ENST00000005226 NOTCH3Q9UM47 2321 aa10.27□□□□□ -0.77
USH1C-201ENST00000005226 DEFB136Q30KP8 78 aa10.27□□□□□ -0.77
USH1C-201ENST00000005226 DAND5Q8N907 189 aa10.27□□□□□ -0.77
USH1C-201ENST00000005226 LITAFQ99732 161 aa10.27□□□□□ -0.77
USH1C-201ENST00000005226 A0A0B4J2C4 111 aa10.26□□□□□ -0.77
USH1C-201ENST00000005226 CRLF1O75462 422 aa10.26□□□□□ -0.77
USH1C-201ENST00000005226 LINC01620Q4KN68 170 aa10.26□□□□□ -0.77
USH1C-201ENST00000005226 C18orf65Q6ZTR6 163 aa10.26□□□□□ -0.77
USH1C-201ENST00000005226 DUX3Q96PT4 197 aa10.25□□□□□ -0.77
USH1C-201ENST00000005226 PKD1L2Q7Z442 2459 aa10.25□□□□□ -0.77
USH1C-201ENST00000005226 DEFB131AP59861 70 aa10.25□□□□□ -0.77
USH1C-201ENST00000005226 ODF3Q96PU9 254 aa10.25□□□□□ -0.77
USH1C-201ENST00000005226 TNFRSF18Q9Y5U5 241 aa10.25□□□□□ -0.77
USH1C-201ENST00000005226 HOXD3P31249 432 aaPredicted RBP10.24□□□□□ -0.77
USH1C-201ENST00000005226 NDUFA12Q9UI09 145 aa10.24□□□□□ -0.77
USH1C-201ENST00000005226 C2CD3Q4AC94 2353 aa10.24□□□□□ -0.77
USH1C-201ENST00000005226 MYO9AB2RTY4 2548 aa10.24□□□□□ -0.77
USH1C-201ENST00000005226 CLEC2BQ92478 149 aa10.24□□□□□ -0.77
USH1C-201ENST00000005226 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.23□□□□□ -0.77
USH1C-201ENST00000005226 TRAV4A0A0B4J268 109 aa10.23□□□□□ -0.77
USH1C-201ENST00000005226 RBMY1BA6NDE4 496 aaKnown RBP10.23□□□□□ -0.77
USH1C-201ENST00000005226 RBMY1EA6NEQ0 496 aaKnown RBP10.23□□□□□ -0.77
USH1C-201ENST00000005226 RBMY1DP0C7P1 496 aaKnown RBP10.23□□□□□ -0.77
USH1C-201ENST00000005226 ATXN8Q156A1 80 aa10.23□□□□□ -0.77
USH1C-201ENST00000005226 TRGV11A0A075B6L2 103 aa10.23□□□□□ -0.77
USH1C-201ENST00000005226 SLURP1P55000 103 aa10.23□□□□□ -0.77
USH1C-201ENST00000005226 MYO18BQ8IUG5 2567 aa10.23□□□□□ -0.77
USH1C-201ENST00000005226 A0A0U1RRA0 63 aa10.22□□□□□ -0.77
USH1C-201ENST00000005226 MRPS36P82909 103 aaKnown RBP10.22□□□□□ -0.77
USH1C-201ENST00000005226 ZFAND6Q6FIF0 208 aa10.22□□□□□ -0.77
USH1C-201ENST00000005226 ANAPC13Q9BS18 74 aa10.22□□□□□ -0.77
USH1C-201ENST00000005226 IGHV1-58A0A0C4DH39 117 aa10.22□□□□□ -0.77
USH1C-201ENST00000005226 TEX29Q8N6K0 151 aa10.22□□□□□ -0.77
USH1C-201ENST00000005226 LINC00467Q9BRT7 94 aa10.22□□□□□ -0.77
USH1C-201ENST00000005226 CHCHD7Q9BUK0 85 aa10.21□□□□□ -0.77
USH1C-201ENST00000005226 B4DSR2 109 aa10.21□□□□□ -0.78
USH1C-201ENST00000005226 TMEM262E9PQX1 116 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 ZNF625Q96I27 306 aaPredicted RBP10.2□□□□□ -0.78
USH1C-201ENST00000005226 VSIG2Q96IQ7 327 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 ICOSQ9Y6W8 199 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 CITED1Q99966 193 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 PYGO1Q9Y3Y4 419 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 C2orf82Q6UX34 121 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.2□□□□□ -0.78
USH1C-201ENST00000005226 UBE2D4Q9Y2X8 147 aa10.2□□□□□ -0.78
USH1C-201ENST00000005226 FBN2P35556 2912 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 ANKRD17O75179 2603 aaKnown RBP10.19□□□□□ -0.78
USH1C-201ENST00000005226 TRBV30A0A0K0K1B3 111 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 H7C423 109 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 CDKN2A-AS1Q9UH64 79 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 DOPEY1Q5JWR5 2465 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 TRBV10-2A0A0K0K1G8 114 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 WNK1Q9H4A3 2382 aa10.19□□□□□ -0.78
USH1C-201ENST00000005226 FAM208BQ5VWN6 2430 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 NHLRC4P0CG21 123 aaPredicted RBP10.18□□□□□ -0.78
USH1C-201ENST00000005226 TLN2Q9Y4G6 2542 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 TEX15Q9BXT5 2789 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 H3BMM0 161 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 NDUFA7O95182 113 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 COX6A2Q02221 97 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 MIAQ16674 131 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 ACACBO00763 2458 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 CACNA1AO00555 2505 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 CHD6Q8TD26 2715 aa10.18□□□□□ -0.78
USH1C-201ENST00000005226 TRAV8-4A0A0B4J246 113 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 SNCGO76070 127 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 LINC01587Q99440 93 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 GAGE2BQ13066 116 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 GAGE2EQ4V326 116 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 GAGE2DQ9UEU5 116 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 SS18L2Q9UHA2 77 aa10.17□□□□□ -0.78
USH1C-201ENST00000005226 TINCRA0A1B0GVN0 87 aa10.16□□□□□ -0.78
USH1C-201ENST00000005226 RPL13AP40429 203 aaKnown RBP10.16□□□□□ -0.78
USH1C-201ENST00000005226 C15orf53Q8NAA6 179 aa10.16□□□□□ -0.78
USH1C-201ENST00000005226 UBE2WQ96B02 151 aa10.16□□□□□ -0.78
USH1C-201ENST00000005226 TTC32Q5I0X7 151 aa10.16□□□□□ -0.78
USH1C-201ENST00000005226 TMEM61Q8N0U2 210 aa10.16□□□□□ -0.78
USH1C-201ENST00000005226 IGHV3OR16-12A0A075B7B8 117 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 B5MCH6 92 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 SPANXDQ9BXN6 97 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 SPANXCQ9NY87 97 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 SETD2Q9BYW2 2564 aaPredicted RBP10.15□□□□□ -0.78
USH1C-201ENST00000005226 IGSF10Q6WRI0 2623 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 TMEM101Q96IK0 257 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 PRORYQ9H606 182 aa10.15□□□□□ -0.78
USH1C-201ENST00000005226 NIPBLQ6KC79 2804 aaeCLIP10.14□□□□□ -0.79
USH1C-201ENST00000005226 M0QXV9 152 aa10.14□□□□□ -0.79
USH1C-201ENST00000005226 ZNF702PQ9H963 129 aa10.14□□□□□ -0.79
USH1C-201ENST00000005226 ABCA12Q86UK0 2595 aa10.14□□□□□ -0.79
USH1C-201ENST00000005226 EPG5Q9HCE0 2579 aa10.14□□□□□ -0.79
USH1C-201ENST00000005226 KHDC1LQ5JSQ8 128 aa10.14□□□□□ -0.79
USH1C-201ENST00000005226 DGAT2L7PQ6IED9 249 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 UBE2E2Q96LR5 201 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 PTPN13Q12923 2485 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 TMEM89A2RUT3 159 aa10.13□□□□□ -0.79
USH1C-201ENST00000005226 COX6CP09669 75 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms