RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 LHFPL6Q9Y693 200 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TENM1Q9UKZ4 2725 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 H3BT86 120 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 J3QQQ9 107 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 M0QXV9 152 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 A0A087WWL8 130 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 C17orf98A8MV24 154 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 F8VRH5 84 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CISD3P0C7P0 127 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CECR9P0C854 216 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV1-2P23083 117 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 ZNF826PQ6ZT77 177 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 Q86TA4 180 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TIMM17BO60830 172 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CFC1BP0CG36 223 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CFC1P0CG37 223 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 LOXP28300 417 aaPredicted RBP2.2□□□□□ -2.06
SCN1A-219ENST00000641575 NANOS2P60321 138 aaKnown RBP2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CDPF1Q6NVV7 123 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 OPRPNQ99935 248 aaPredicted RBP2.2□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV1OR15-1A0A075B7D0 117 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV3-19P01714 112 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 HGFACQ04756 655 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 MIAQ16674 131 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 ASPHD1Q5U4P2 390 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CD177Q8N6Q3 437 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 UCN2Q96RP3 112 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TP53TG1Q9Y2A0 90 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV4-28A0A0C4DH34 117 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 FAM231DQ6ZW35 169 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 DIRC1Q969H9 104 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 XCL2Q9UBD3 114 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 K7EQD1 137 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CD55P08174 381 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 PFN2P35080 140 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 MORN2Q502X0 79 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TMEM75Q8N9X5 138 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV3OR16-8A0A075B7F1 116 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TRAV4A0A0B4J268 109 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 F8WDY8 70 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 FOXI1Q12951 378 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 SHISA4Q96DD7 197 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CLUHP3Q96NS8 147 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TGFBR3LH3BV60 316 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 CT62P0C5K7 136 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 DAZAP2Q15038 168 aaPredicted RBP2.2□□□□□ -2.06
SCN1A-219ENST00000641575 HIST2H2BCQ6DN03 193 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 HIST2H2BDQ6DRA6 164 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TREML4Q6UXN2 200 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 C1QL2Q7Z5L3 287 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 WDR86Q86TI4 376 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 DEFB105AQ8NG35 78 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 TFF1P04155 84 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 SAA2-SAA4A0A096LPE2 208 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV5-52A0A0A0MRZ9 124 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 CRYGCP07315 174 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 SAA2P0DJI9 122 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 CD59P13987 128 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 TMEM263Q8WUH6 116 aaKnown RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IMUPQ9GZP8 106 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 NTN3O00634 580 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 SLURP2P0DP57 97 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 COL27A1Q8IZC6 1860 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGLC7A0M8Q6 106 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV3-53P01767 116 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV2-5P01817 119 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 MT-ATP8P03928 68 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 WT1P19544 449 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 NDPQ00604 133 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 Q8N9L7 120 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 DNAH12Q6ZR08 3092 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 LY6G6EA0A0G2JKS1 128 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 C12orf77C9JDV5 145 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 CAMK2N1Q7Z7J9 78 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 A0A087WV48 116 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 SMIM26A0A096LP01 95 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 PRSS46E5RG02 174 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1-39P01597 117 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV1D-39P04432 117 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 CRYGDP07320 174 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 LGALS9BQ3B8N2 356 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 C1orf134Q5TEV5 83 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 Q6ZR03 302 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 GFI1Q99684 422 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 IGLL1P15814 213 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 PAX9P55771 341 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 WFDC2Q14508 124 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 MRPL51Q4U2R6 128 aaKnown RBP2.19□□□□□ -2.06
SCN1A-219ENST00000641575 CBLN3Q6UW01 205 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00643Q86TS7 51 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 ZNF843Q8N446 348 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 LINC00846Q9NV44 126 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 OVOL3O00110 214 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 TRBV7-3A0A075B6L6 115 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 TRBV10-1A0A0K0K1A3 114 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 BRD3OSQ6XYD6 125 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 TACC2O95359 2948 aa2.19□□□□□ -2.06
SCN1A-219ENST00000641575 TGP01266 2768 aa2.18□□□□□ -2.06
SCN1A-219ENST00000641575 TRBV6-7A0A0A0MS04 114 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms