RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 A8MWL6 223 aa10.92□□□□□ -0.66
LSM4-206ENST00000600289 NTF3P20783 257 aa10.92□□□□□ -0.66
LSM4-206ENST00000600289 FOXA3P55318 350 aaPredicted RBP10.92□□□□□ -0.66
LSM4-206ENST00000600289 ERVFC1-1P60608 527 aa10.92□□□□□ -0.66
LSM4-206ENST00000600289 PEA15Q15121 130 aa10.92□□□□□ -0.66
LSM4-206ENST00000600289 GTSF1Q8WW33 167 aa10.92□□□□□ -0.66
LSM4-206ENST00000600289 OSTCQ9NRP0 149 aa10.92□□□□□ -0.66
LSM4-206ENST00000600289 IBA57-AS1B1ANH7 110 aa10.91□□□□□ -0.66
LSM4-206ENST00000600289 F5H697 171 aa10.91□□□□□ -0.66
LSM4-206ENST00000600289 H7C1H1 209 aa10.91□□□□□ -0.66
LSM4-206ENST00000600289 SSTP61278 116 aa10.91□□□□□ -0.66
LSM4-206ENST00000600289 LAGE3Q14657 143 aa10.91□□□□□ -0.66
LSM4-206ENST00000600289 DPH3P1Q9H4G8 78 aa10.91□□□□□ -0.66
LSM4-206ENST00000600289 DNAH5Q8TE73 4624 aa10.9□□□□□ -0.66
LSM4-206ENST00000600289 FAM231BA6NCW3 169 aa10.9□□□□□ -0.66
LSM4-206ENST00000600289 C9JQL5 133 aa10.9□□□□□ -0.66
LSM4-206ENST00000600289 DNAJC30Q96LL9 226 aa10.9□□□□□ -0.66
LSM4-206ENST00000600289 GFRA4Q9GZZ7 299 aa10.9□□□□□ -0.66
LSM4-206ENST00000600289 M0QY20 66 aa10.89□□□□□ -0.67
LSM4-206ENST00000600289 SRSF3P84103 164 aaKnown RBP10.89□□□□□ -0.67
LSM4-206ENST00000600289 TMEM241Q24JQ0 296 aa10.89□□□□□ -0.67
LSM4-206ENST00000600289 SUMO4Q6EEV6 95 aa10.89□□□□□ -0.67
LSM4-206ENST00000600289 ISOC2Q96AB3 205 aa10.89□□□□□ -0.67
LSM4-206ENST00000600289 CHCHD7Q9BUK0 85 aa10.89□□□□□ -0.67
LSM4-206ENST00000600289 CDK2AP2O75956 126 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 MGPP08493 103 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 RPL23P62829 140 aaKnown RBP10.88□□□□□ -0.67
LSM4-206ENST00000600289 TWIST1Q15672 202 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 TMEM97Q5BJF2 176 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 DAZ4Q86SG3 579 aaKnown RBP10.88□□□□□ -0.67
LSM4-206ENST00000600289 Q8N1X5 172 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.88□□□□□ -0.67
LSM4-206ENST00000600289 TSKUQ8WUA8 353 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 DAZ3Q9NR90 486 aaKnown RBP10.88□□□□□ -0.67
LSM4-206ENST00000600289 NAT8Q9UHE5 227 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 TNFRSF18Q9Y5U5 241 aa10.88□□□□□ -0.67
LSM4-206ENST00000600289 TRBV6-8A0A0A6YYG3 113 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 IGHV3-30P01768 117 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 IGHV3-33P01772 117 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 IGHV3-30-3P0DP02 117 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 IGHV3-30-5P0DP03 117 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 NIT1Q86X76 327 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 C15orf54Q8N8G6 183 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 FRZBQ92765 325 aa10.87□□□□□ -0.67
LSM4-206ENST00000600289 RASL11AQ6T310 242 aa10.86□□□□□ -0.67
LSM4-206ENST00000600289 V9GYV3 84 aa10.86□□□□□ -0.67
LSM4-206ENST00000600289 RAB14P61106 215 aa10.85□□□□□ -0.67
LSM4-206ENST00000600289 HIGD1CA8MV81 97 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 PKIAP61925 76 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 SMIM15Q7Z3B0 74 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 Q8N3U1 123 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 BORCS7Q96B45 105 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 PGLYRP4Q96LB8 373 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 NIT2Q9NQR4 276 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 URGCP-MRPS24S4R325 110 aa10.84□□□□□ -0.67
LSM4-206ENST00000600289 MYCBP2O75592 4640 aa10.83□□□□□ -0.68
LSM4-206ENST00000600289 TRAV8-3A0A0A6YYJ7 113 aa10.83□□□□□ -0.68
LSM4-206ENST00000600289 A0A1B0GUT8 65 aa10.83□□□□□ -0.68
LSM4-206ENST00000600289 ADIRFQ15847 76 aa10.83□□□□□ -0.68
LSM4-206ENST00000600289 CLLU1Q5K131 121 aa10.83□□□□□ -0.68
LSM4-206ENST00000600289 A0A087WTM6 91 aa10.82□□□□□ -0.68
LSM4-206ENST00000600289 EREGO14944 169 aa10.82□□□□□ -0.68
LSM4-206ENST00000600289 ELOBQ15370 118 aa10.82□□□□□ -0.68
LSM4-206ENST00000600289 NTM-AS1Q6ZSK4 140 aa10.82□□□□□ -0.68
LSM4-206ENST00000600289 SPATA12Q7Z6I5 190 aa10.82□□□□□ -0.68
LSM4-206ENST00000600289 A0A087WX48 190 aa10.81□□□□□ -0.68
LSM4-206ENST00000600289 IQCJQ1A5X6 159 aa10.81□□□□□ -0.68
LSM4-206ENST00000600289 GATD1Q8NB37 220 aa10.81□□□□□ -0.68
LSM4-206ENST00000600289 TMEM191AQ9H0A3 160 aa10.81□□□□□ -0.68
LSM4-206ENST00000600289 TRBV25-1A0A075B6N4 114 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 C16orf90A8MZG2 172 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 KCNIP4Q6PIL6 250 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 NUP35Q8NFH5 326 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 TM2D2Q9BX73 214 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 Q9HAA7 133 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 NAT8BQ9UHF3 227 aa10.8□□□□□ -0.68
LSM4-206ENST00000600289 SMIM27A0A1W2PRY6 76 aa10.79□□□□□ -0.68
LSM4-206ENST00000600289 LRCOL1A6NCL2 159 aa10.79□□□□□ -0.68
LSM4-206ENST00000600289 KRTAP10-2P60368 255 aa10.79□□□□□ -0.68
LSM4-206ENST00000600289 CDPF1Q6NVV7 123 aa10.79□□□□□ -0.68
LSM4-206ENST00000600289 PGPEP1Q9NXJ5 209 aa10.79□□□□□ -0.68
LSM4-206ENST00000600289 COX11Q9Y6N1 276 aa10.79□□□□□ -0.68
LSM4-206ENST00000600289 IGHV1-24A0A0C4DH33 117 aa10.78□□□□□ -0.68
LSM4-206ENST00000600289 PSCAO43653 123 aa10.78□□□□□ -0.68
LSM4-206ENST00000600289 IFITM2Q01629 132 aa10.78□□□□□ -0.68
LSM4-206ENST00000600289 ATRAIDQ6UW56 229 aa10.78□□□□□ -0.68
LSM4-206ENST00000600289 CHCHD5Q9BSY4 110 aa10.78□□□□□ -0.68
LSM4-206ENST00000600289 TRAV26-2A0A0B4J265 109 aa10.77□□□□□ -0.69
LSM4-206ENST00000600289 RIGQ13278 110 aa10.77□□□□□ -0.69
LSM4-206ENST00000600289 MPV17L2Q567V2 206 aa10.77□□□□□ -0.69
LSM4-206ENST00000600289 RMI2Q96E14 147 aa10.77□□□□□ -0.69
LSM4-206ENST00000600289 KLK12Q9UKR0 248 aa10.77□□□□□ -0.69
LSM4-206ENST00000600289 TRBV6-5A0A0K0K1A5 114 aa10.76□□□□□ -0.69
LSM4-206ENST00000600289 TMEM262E9PQX1 116 aa10.76□□□□□ -0.69
LSM4-206ENST00000600289 Q0VG73 95 aa10.76□□□□□ -0.69
LSM4-206ENST00000600289 PNRC1Q12796 327 aaPredicted RBP10.76□□□□□ -0.69
LSM4-206ENST00000600289 A0A1B0GW15 77 aa10.75□□□□□ -0.69
LSM4-206ENST00000600289 NCR2O95944 276 aa10.75□□□□□ -0.69
LSM4-206ENST00000600289 RPL39LQ96EH5 51 aaKnown RBP10.75□□□□□ -0.69
LSM4-206ENST00000600289 MRAP2Q96G30 205 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms