RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 GAGE4Q13068 117 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 GAGE5Q13069 117 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 ADIRFQ15847 76 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 TMEM241Q24JQ0 296 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 GAGE13Q4V321 117 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 CLLU1Q5K131 121 aa12.55□□□□□ -0.4
PNKP-213ENST00000599543 LRCOL1A6NCL2 159 aa12.54□□□□□ -0.4
PNKP-213ENST00000599543 RPL23P62829 140 aaKnown RBP12.54□□□□□ -0.4
PNKP-213ENST00000599543 Q5VSD8 79 aa12.54□□□□□ -0.4
PNKP-213ENST00000599543 NTN5Q8WTR8 489 aaPredicted RBP12.54□□□□□ -0.4
PNKP-213ENST00000599543 GTSF1Q8WW33 167 aa12.54□□□□□ -0.4
PNKP-213ENST00000599543 DMBT1Q9UGM3 2413 aaPredicted RBP12.54□□□□□ -0.4
PNKP-213ENST00000599543 RHODO00212 210 aa12.53□□□□□ -0.4
PNKP-213ENST00000599543 LAGE3Q14657 143 aa12.53□□□□□ -0.4
PNKP-213ENST00000599543 ZNF56Q15929 161 aa12.53□□□□□ -0.4
PNKP-213ENST00000599543 FAM231DQ6ZW35 169 aa12.53□□□□□ -0.4
PNKP-213ENST00000599543 FAT1Q14517 4588 aa12.53□□□□□ -0.4
PNKP-213ENST00000599543 MGPP08493 103 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 INAFM2P0DMQ5 153 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 FAM74A3Q4VXF1 159 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 Q8N814 137 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 ISOC2Q96AB3 205 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 PGLYRP4Q96LB8 373 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 NAT8Q9UHE5 227 aa12.52□□□□□ -0.41
PNKP-213ENST00000599543 NTF3P20783 257 aa12.51□□□□□ -0.41
PNKP-213ENST00000599543 CTRLP40313 264 aa12.51□□□□□ -0.41
PNKP-213ENST00000599543 AP1S3Q96PC3 154 aa12.51□□□□□ -0.41
PNKP-213ENST00000599543 F2Z2F3 143 aa12.5□□□□□ -0.41
PNKP-213ENST00000599543 F5H697 171 aa12.5□□□□□ -0.41
PNKP-213ENST00000599543 CACNG7P62955 275 aa12.5□□□□□ -0.41
PNKP-213ENST00000599543 SMDT1Q9H4I9 107 aa12.5□□□□□ -0.41
PNKP-213ENST00000599543 OSTCQ9NRP0 149 aa12.5□□□□□ -0.41
PNKP-213ENST00000599543 KIF25-AS1Q9Y6Z4 181 aa12.5□□□□□ -0.41
PNKP-213ENST00000599543 A8MWL6 223 aa12.49□□□□□ -0.41
PNKP-213ENST00000599543 SMR3BP02814 79 aaPredicted RBP12.49□□□□□ -0.41
PNKP-213ENST00000599543 SMIM17P0DL12 118 aa12.49□□□□□ -0.41
PNKP-213ENST00000599543 LINC00694P0DN24 101 aa12.49□□□□□ -0.41
PNKP-213ENST00000599543 TWIST1Q15672 202 aa12.49□□□□□ -0.41
PNKP-213ENST00000599543 TM2D2Q9BX73 214 aa12.49□□□□□ -0.41
PNKP-213ENST00000599543 V9GYV3 84 aa12.49□□□□□ -0.41
PNKP-213ENST00000599543 Q8N3U1 123 aa12.48□□□□□ -0.41
PNKP-213ENST00000599543 C15orf54Q8N8G6 183 aa12.48□□□□□ -0.41
PNKP-213ENST00000599543 TMEM70Q9BUB7 260 aa12.48□□□□□ -0.41
PNKP-213ENST00000599543 SRRM2Q9UQ35 2752 aaKnown RBP12.48□□□□□ -0.41
PNKP-213ENST00000599543 A0A087WWC5 75 aa12.47□□□□□ -0.41
PNKP-213ENST00000599543 FOXA3P55318 350 aaPredicted RBP12.47□□□□□ -0.41
PNKP-213ENST00000599543 HAMPP81172 84 aa12.47□□□□□ -0.41
PNKP-213ENST00000599543 OR10G8Q8NGN5 311 aa12.47□□□□□ -0.41
PNKP-213ENST00000599543 VPS13BQ7Z7G8 4022 aa12.47□□□□□ -0.41
PNKP-213ENST00000599543 HERC1Q15751 4861 aa12.46□□□□□ -0.41
PNKP-213ENST00000599543 FLG2Q5D862 2391 aaPredicted RBP12.46□□□□□ -0.41
PNKP-213ENST00000599543 TRAV8-3A0A0A6YYJ7 113 aa12.46□□□□□ -0.41
PNKP-213ENST00000599543 RAB4BP61018 213 aa12.46□□□□□ -0.41
PNKP-213ENST00000599543 FAM229AH3BQW9 127 aa12.45□□□□□ -0.42
PNKP-213ENST00000599543 CT83Q5H943 113 aa12.45□□□□□ -0.42
PNKP-213ENST00000599543 NEXN-AS1Q8NBZ9 246 aa12.45□□□□□ -0.42
PNKP-213ENST00000599543 TSKUQ8WUA8 353 aa12.45□□□□□ -0.42
PNKP-213ENST00000599543 URGCP-MRPS24S4R325 110 aa12.45□□□□□ -0.42
PNKP-213ENST00000599543 MYCBP2O75592 4640 aa12.44□□□□□ -0.42
PNKP-213ENST00000599543 HIGD1CA8MV81 97 aa12.44□□□□□ -0.42
PNKP-213ENST00000599543 TRGC1P0CF51 173 aa12.44□□□□□ -0.42
PNKP-213ENST00000599543 SUMO4Q6EEV6 95 aa12.44□□□□□ -0.42
PNKP-213ENST00000599543 DAZ4Q86SG3 579 aaKnown RBP12.44□□□□□ -0.42
PNKP-213ENST00000599543 DAZ3Q9NR90 486 aaKnown RBP12.44□□□□□ -0.42
PNKP-213ENST00000599543 COMMD7Q86VX2 200 aa12.43□□□□□ -0.42
PNKP-213ENST00000599543 CNFNQ9BYD5 112 aa12.43□□□□□ -0.42
PNKP-213ENST00000599543 RPL36AP83881 106 aaKnown RBP12.42□□□□□ -0.42
PNKP-213ENST00000599543 WDR73Q6P4I2 378 aa12.42□□□□□ -0.42
PNKP-213ENST00000599543 RPL36ALQ969Q0 106 aaKnown RBP12.42□□□□□ -0.42
PNKP-213ENST00000599543 DPH3P1Q9H4G8 78 aa12.42□□□□□ -0.42
PNKP-213ENST00000599543 TRAV26-2A0A0B4J265 109 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 LECT2O14960 151 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 UBE2D3P61077 147 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 UBE2D2P62837 147 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 WFDC2Q14508 124 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 NUP35Q8NFH5 326 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 DEFB104AQ8WTQ1 72 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 BORCS7Q96B45 105 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 COX11Q9Y6N1 276 aa12.41□□□□□ -0.42
PNKP-213ENST00000599543 TRBV7-3A0A075B6L6 115 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 TRBV10-1A0A0K0K1A3 114 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 M0QY20 66 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 ADCYAP1P18509 176 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 NIT1Q86X76 327 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 RMI2Q96E14 147 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 GFRA4Q9GZZ7 299 aa12.4□□□□□ -0.42
PNKP-213ENST00000599543 A0A1B0GUT8 65 aa12.39□□□□□ -0.43
PNKP-213ENST00000599543 FAM30AQ9NZY2 134 aa12.39□□□□□ -0.43
PNKP-213ENST00000599543 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.38□□□□□ -0.43
PNKP-213ENST00000599543 KCNIP4Q6PIL6 250 aa12.38□□□□□ -0.43
PNKP-213ENST00000599543 A0A087WX48 190 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 SMIM27A0A1W2PRY6 76 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 TMEM218A2RU14 115 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 RASL11AQ6T310 242 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 SMIM15Q7Z3B0 74 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 GATD1Q8NB37 220 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 BAALCQ8WXS3 180 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 NAT8BQ9UHF3 227 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 KLK12Q9UKR0 248 aa12.37□□□□□ -0.43
PNKP-213ENST00000599543 IGKV2D-24A0A075B6R9 120 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms