RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MGPP08493 103 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 CDPF1Q6NVV7 123 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 FAM231DQ6ZW35 169 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 NIT1Q86X76 327 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 Q8N3U1 123 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 SMIM7Q9BQ49 75 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 CNFNQ9BYD5 112 aa10.87□□□□□ -0.67
TRIM28-206ENST00000595974 H7C1H1 209 aa10.86□□□□□ -0.67
TRIM28-206ENST00000595974 DAZ4Q86SG3 579 aaKnown RBP10.86□□□□□ -0.67
TRIM28-206ENST00000595974 DPH3P1Q9H4G8 78 aa10.86□□□□□ -0.67
TRIM28-206ENST00000595974 DAZ3Q9NR90 486 aaKnown RBP10.86□□□□□ -0.67
TRIM28-206ENST00000595974 PGPEP1Q9NXJ5 209 aa10.86□□□□□ -0.67
TRIM28-206ENST00000595974 TRBV6-8A0A0A6YYG3 113 aa10.85□□□□□ -0.67
TRIM28-206ENST00000595974 TRAV8-3A0A0A6YYJ7 113 aa10.85□□□□□ -0.67
TRIM28-206ENST00000595974 GATCO43716 136 aaKnown RBP10.85□□□□□ -0.67
TRIM28-206ENST00000595974 CDK2AP2O75956 126 aa10.85□□□□□ -0.67
TRIM28-206ENST00000595974 NTF3P20783 257 aa10.85□□□□□ -0.67
TRIM28-206ENST00000595974 TMEM97Q5BJF2 176 aa10.85□□□□□ -0.67
TRIM28-206ENST00000595974 CT83Q5H943 113 aa10.85□□□□□ -0.67
TRIM28-206ENST00000595974 A0A087WX48 190 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 M0QY20 66 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 SRP19P09132 144 aaKnown RBP10.84□□□□□ -0.67
TRIM28-206ENST00000595974 SUMO4Q6EEV6 95 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 KCNIP4Q6PIL6 250 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 TEX261Q6UWH6 196 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 DNAJC30Q96LL9 226 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 TM2D2Q9BX73 214 aa10.84□□□□□ -0.67
TRIM28-206ENST00000595974 ZNF727A8MUV8 499 aa10.83□□□□□ -0.68
TRIM28-206ENST00000595974 A8MWL6 223 aa10.83□□□□□ -0.68
TRIM28-206ENST00000595974 PKIAP61925 76 aa10.83□□□□□ -0.68
TRIM28-206ENST00000595974 ELOBQ15370 118 aa10.83□□□□□ -0.68
TRIM28-206ENST00000595974 LINC01551Q86U37 167 aa10.83□□□□□ -0.68
TRIM28-206ENST00000595974 HSPG2P98160 4391 aa10.83□□□□□ -0.68
TRIM28-206ENST00000595974 LRCOL1A6NCL2 159 aa10.82□□□□□ -0.68
TRIM28-206ENST00000595974 TWIST1Q15672 202 aa10.82□□□□□ -0.68
TRIM28-206ENST00000595974 RASL11AQ6T310 242 aa10.82□□□□□ -0.68
TRIM28-206ENST00000595974 GTSF1Q8WW33 167 aa10.82□□□□□ -0.68
TRIM28-206ENST00000595974 APOBP04114 4563 aaKnown RBP10.82□□□□□ -0.68
TRIM28-206ENST00000595974 RMI2Q96E14 147 aa10.81□□□□□ -0.68
TRIM28-206ENST00000595974 COX11Q9Y6N1 276 aa10.81□□□□□ -0.68
TRIM28-206ENST00000595974 FAM74A3Q4VXF1 159 aa10.8□□□□□ -0.68
TRIM28-206ENST00000595974 SMIM15Q7Z3B0 74 aa10.8□□□□□ -0.68
TRIM28-206ENST00000595974 KLK12Q9UKR0 248 aa10.8□□□□□ -0.68
TRIM28-206ENST00000595974 TRBV25-1A0A075B6N4 114 aa10.79□□□□□ -0.68
TRIM28-206ENST00000595974 FOXA3P55318 350 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-206ENST00000595974 NTM-AS1Q6ZSK4 140 aa10.79□□□□□ -0.68
TRIM28-206ENST00000595974 NTN5Q8WTR8 489 aaPredicted RBP10.79□□□□□ -0.68
TRIM28-206ENST00000595974 CHCHD5Q9BSY4 110 aa10.79□□□□□ -0.68
TRIM28-206ENST00000595974 NIT2Q9NQR4 276 aa10.79□□□□□ -0.68
TRIM28-206ENST00000595974 OSTCQ9NRP0 149 aa10.79□□□□□ -0.68
TRIM28-206ENST00000595974 TMEM262E9PQX1 116 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 FUSP35637 526 aaKnown RBP eCLIP10.78□□□□□ -0.68
TRIM28-206ENST00000595974 IQCJQ1A5X6 159 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 MPV17L2Q567V2 206 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 Q8N814 137 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 TSKUQ8WUA8 353 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 FRZBQ92765 325 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 UBE2WQ96B02 151 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 BORCS7Q96B45 105 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 PGLYRP4Q96LB8 373 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 GFRA4Q9GZZ7 299 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 SMDT1Q9H4I9 107 aa10.78□□□□□ -0.68
TRIM28-206ENST00000595974 IGHV1-24A0A0C4DH33 117 aa10.77□□□□□ -0.69
TRIM28-206ENST00000595974 FAM231BA6NCW3 169 aa10.77□□□□□ -0.69
TRIM28-206ENST00000595974 Q0VG73 95 aa10.77□□□□□ -0.69
TRIM28-206ENST00000595974 PEA15Q15121 130 aa10.77□□□□□ -0.69
TRIM28-206ENST00000595974 TMEM241Q24JQ0 296 aa10.77□□□□□ -0.69
TRIM28-206ENST00000595974 C15orf54Q8N8G6 183 aa10.77□□□□□ -0.69
TRIM28-206ENST00000595974 HIGD1CA8MV81 97 aa10.76□□□□□ -0.69
TRIM28-206ENST00000595974 ATRAIDQ6UW56 229 aa10.76□□□□□ -0.69
TRIM28-206ENST00000595974 ISOC2Q96AB3 205 aa10.76□□□□□ -0.69
TRIM28-206ENST00000595974 IGKV2D-24A0A075B6R9 120 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 IGLV5-52A0A0A0MRZ9 124 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 A0A1B0GUT8 65 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 C9JQL5 133 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 CRPP02741 224 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 ANGP03950 147 aaKnown RBP10.75□□□□□ -0.69
TRIM28-206ENST00000595974 GATD1Q8NB37 220 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 NAT8Q9UHE5 227 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 V9GYV3 84 aa10.75□□□□□ -0.69
TRIM28-206ENST00000595974 PCLOQ9Y6V0 5065 aa10.74□□□□□ -0.69
TRIM28-206ENST00000595974 TRAV26-2A0A0B4J265 109 aa10.74□□□□□ -0.69
TRIM28-206ENST00000595974 RPL23P62829 140 aaKnown RBP10.74□□□□□ -0.69
TRIM28-206ENST00000595974 SRSF3P84103 164 aaKnown RBP10.74□□□□□ -0.69
TRIM28-206ENST00000595974 GCSHP23434 173 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 RBX1P62877 108 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 GAGE6Q13070 117 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 COTL1Q14019 142 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 WFDC2Q14508 124 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 ADIRFQ15847 76 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 ENHOQ6UWT2 76 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 MAPKAPK5-AS1Q8N8E1 139 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 Q8N976 141 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 TMEM243Q9BU79 118 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 C1orf43Q9BWL3 253 aa10.73□□□□□ -0.69
TRIM28-206ENST00000595974 KRTAP10-1P60331 282 aa10.72□□□□□ -0.69
TRIM28-206ENST00000595974 LECT2O14960 151 aa10.71□□□□□ -0.69
TRIM28-206ENST00000595974 MIAQ16674 131 aa10.71□□□□□ -0.69
TRIM28-206ENST00000595974 BAALCQ8WXS3 180 aa10.71□□□□□ -0.69
TRIM28-206ENST00000595974 RPL39LQ96EH5 51 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms