RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	NABP2	Q9BQ15	211 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	KIF25-AS1	Q9Y6Z4	181 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	TRANK1	O15050	2925 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	XIRP2	A4UGR9	3374 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	MYO9B	Q13459	2157 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	ARID1A	O14497	2285 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	PTPRS	Q13332	1948 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	ZNF318	Q5VUA4	2279 aa		3.21	□□□□□ -1.9
SS18-223	ENST00000583595	TET1	Q8NFU7	2136 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	AGRN	O00468	2067 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	IGHV7-4-1	A0A0J9YVY3	117 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	TRBV6-1	A0A0K0K1D8	114 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	LY6L	H3BQJ8	138 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595		H3BT86	120 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595		K7EMI3	77 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	NDUFC2	O95298	119 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	COL8A2	P25067	703 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	PLN	P26678	52 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	KRTAP10-3	P60369	221 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	EIF4EBP1	Q13541	118 aa	Predicted RBP	3.2	□□□□□ -1.9
SS18-223	ENST00000583595	AAED1	Q7RTV5	226 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	C5orf38	Q86SI9	138 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	RPS19BP1	Q86WX3	136 aa	Known RBP	3.2	□□□□□ -1.9
SS18-223	ENST00000583595	NDUFA11	Q86Y39	141 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	MKX	Q8IYA7	352 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	SLC25A45	Q8N413	288 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	RTL8A	Q9BWD3	113 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	TTTY13	Q9BZ97	58 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	NXT2	Q9NPJ8	142 aa	Known RBP	3.2	□□□□□ -1.9
SS18-223	ENST00000583595	ZNRD1	Q9P1U0	126 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	LINC00527	Q9UJ94	153 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	PKIG	Q9Y2B9	76 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	SMAD5-AS1	Q9Y6J3	95 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	BRWD1	Q9NSI6	2320 aa		3.2	□□□□□ -1.9
SS18-223	ENST00000583595	hADV29S1	A0JD25	119 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595		H0YGG7	62 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	IGKV3-15	P01624	115 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	CLPS	P04118	112 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	PYY	P10082	97 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	CCL8	P80075	99 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	ZNF816	Q0VGE8	651 aa	Predicted RBP	3.19	□□□□□ -1.9
SS18-223	ENST00000583595	NNAT	Q16517	81 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	DEFB116	Q30KQ4	102 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	C10orf128	Q5T292	105 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	FAM104B	Q5XKR9	115 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	WDR86	Q86TI4	376 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	EXOC3-AS1	Q8N2X6	119 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	COPS9	Q8WXC6	57 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	SHANK2-AS3	Q9BTD1	123 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	PRO1854	Q9UHT4	67 aa		3.19	□□□□□ -1.9
SS18-223	ENST00000583595	MPDZ	O75970	2070 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	EXPH5	Q8NEV8	1989 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	TRAV12-2	A0A075B6T6	113 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	IGHV3-49	A0A0A0MS15	119 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	TRAV12-1	A0A0B4J245	112 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	FAM236D	A0A1B0GTK5	79 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	TMEM223	A0PJW6	202 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595		D6R8Y8	96 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	FAM236C	P0DP71	79 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	SPTB	P11277	2137 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	SLC25A16	P16260	332 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	CRYGS	P22914	178 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	HIST1H4A	P62805	103 aa	Known RBP	3.18	□□□□□ -1.9
SS18-223	ENST00000583595	C2orf82	Q6UX34	121 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595		Q8N8P6	123 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	FAM167A-AS1	Q96KT0	104 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	ZNF714	Q96N38	554 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	SERP1	Q9Y6X1	66 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	ADAMTS9	Q9P2N4	1935 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	PCDH15	Q96QU1	1955 aa		3.18	□□□□□ -1.9
SS18-223	ENST00000583595	FREM3	P0C091	2139 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	TRAV40	A0A0B4J280	105 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595		A0A0B4J2C4	111 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	TEX49	A0A1B0GTD5	131 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	C17orf98	A8MV24	154 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	ARMS2	P0C7Q2	107 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	CD28	P10747	220 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	MP68	P56378	58 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	MRPL51	Q4U2R6	128 aa	Known RBP	3.17	□□□□□ -1.9
SS18-223	ENST00000583595	SPINK9	Q5DT21	86 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	IGFL2	Q6UWQ7	119 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	SCGB1D4	Q6XE38	83 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	LINC00322	Q6ZN03	302 aa	Predicted RBP	3.17	□□□□□ -1.9
SS18-223	ENST00000583595	SERP2	Q8N6R1	65 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	TMEM105	Q8N8V8	129 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	DSCR8	Q96T75	97 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	UPK3B	Q9BT76	320 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	DPH3P1	Q9H4G8	78 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	MRPL35	Q9NZE8	188 aa	Known RBP	3.17	□□□□□ -1.9
SS18-223	ENST00000583595	BPTF	Q12830	3046 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	ZDBF2	Q9HCK1	2354 aa		3.17	□□□□□ -1.9
SS18-223	ENST00000583595	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	3.16	□□□□□ -1.9
SS18-223	ENST00000583595	REV3L	O60673	3130 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	3.16	□□□□□ -1.9
SS18-223	ENST00000583595	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	3.16	□□□□□ -1.9
SS18-223	ENST00000583595	TRBV30	A0A0K0K1B3	111 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	ZNF815P	A8K554	130 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595		F8VRH5	84 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	IGHV3-33	P01772	117 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	FKBP2	P26885	142 aa	Known RBP	3.16	□□□□□ -1.9

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