RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TEP1Q99973 2627 aaKnown RBP-0.97□□□□□ -2.56
SS18-214ENST00000580003 MUC17Q685J3 4493 aa-0.97□□□□□ -2.57
SS18-214ENST00000580003 LAMB1P07942 1786 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 KDM5CP41229 1560 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 TRGV1A0A0A0MS02 117 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 TRAV12-3A0A0B4J271 114 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 TRBV10-3A0A0K0K1G6 114 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 NPC2P61916 151 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 Q5VSD8 79 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 PPP1R2P3Q6NXS1 205 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 DOCK11Q5JSL3 2073 aa-0.98□□□□□ -2.57
SS18-214ENST00000580003 USP9YO00507 2555 aaPredicted RBP-0.99□□□□□ -2.57
SS18-214ENST00000580003 PTPRMP28827 1452 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 TMEM244Q5VVB8 128 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 DDA1Q9BW61 102 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 ITPR3Q14573 2671 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 PLXNA1Q9UIW2 1896 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.99□□□□□ -2.57
SS18-214ENST00000580003 ARAP1Q96P48 1450 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 FAT3Q8TDW7 4589 aa-0.99□□□□□ -2.57
SS18-214ENST00000580003 NIPBLQ6KC79 2804 aaeCLIP-1□□□□□ -2.57
SS18-214ENST00000580003 PKDREJQ9NTG1 2253 aa-1□□□□□ -2.57
SS18-214ENST00000580003 DSPP15924 2871 aaKnown RBP-1□□□□□ -2.57
SS18-214ENST00000580003 CASZ1Q86V15 1759 aa-1□□□□□ -2.57
SS18-214ENST00000580003 ALMS1Q8TCU4 4167 aa-1□□□□□ -2.57
SS18-214ENST00000580003 M0R2P5 195 aa-1□□□□□ -2.57
SS18-214ENST00000580003 MT-ND4LP03901 98 aa-1□□□□□ -2.57
SS18-214ENST00000580003 SCTP09683 121 aa-1□□□□□ -2.57
SS18-214ENST00000580003 TCTE3Q8IZS6 198 aa-1□□□□□ -2.57
SS18-214ENST00000580003 HSPB11Q9Y547 144 aa-1□□□□□ -2.57
SS18-214ENST00000580003 FLNBO75369 2602 aaKnown RBP-1□□□□□ -2.57
SS18-214ENST00000580003 PRRC2CQ9Y520 2896 aaKnown RBP-1□□□□□ -2.57
SS18-214ENST00000580003 TRAV36DV7A0A075B6V5 113 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 A0A1B0GX51 115 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 TSTD3H0UI37 97 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 CLLU1Q5K131 121 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 SPANXA1Q9NS26 97 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 WDR87Q6ZQQ6 2873 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 KIF13AQ9H1H9 1805 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 NBPF19A0A087WUL8 3843 aa-1.01□□□□□ -2.57
SS18-214ENST00000580003 ACANP16112 2415 aa-1.02□□□□□ -2.57
SS18-214ENST00000580003 LAMA3Q16787 3333 aa-1.03□□□□□ -2.57
SS18-214ENST00000580003 FABP1P07148 127 aa-1.03□□□□□ -2.57
SS18-214ENST00000580003 SPRR2BP35325 72 aa-1.03□□□□□ -2.57
SS18-214ENST00000580003 DNAH6Q9C0G6 4158 aa-1.03□□□□□ -2.57
SS18-214ENST00000580003 PRM1P04553 51 aa-1.04□□□□□ -2.58
SS18-214ENST00000580003 SMIM6P0DI80 62 aa-1.04□□□□□ -2.58
SS18-214ENST00000580003 CMPK1P30085 196 aa-1.04□□□□□ -2.58
SS18-214ENST00000580003 EDDM3BP56851 147 aa-1.04□□□□□ -2.58
SS18-214ENST00000580003 KRTAP6-2Q3LI66 62 aa-1.04□□□□□ -2.58
SS18-214ENST00000580003 Q5VV11 94 aa-1.04□□□□□ -2.58
SS18-214ENST00000580003 GOLGA3Q08378 1498 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 DNAH2Q9P225 4427 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 AKAP11Q9UKA4 1901 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 APC2O95996 2303 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 PKHD1P08F94 4074 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 TRAV22A0A0B4J277 110 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 TNFSF15O95150 251 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 SMIM15Q7Z3B0 74 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 PHIPQ8WWQ0 1821 aa-1.05□□□□□ -2.58
SS18-214ENST00000580003 SPTBN4Q9H254 2564 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 G3V318 75 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 SPRR2EP22531 72 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 WFDC6Q9BQY6 131 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 KIAA0100Q14667 2235 aaKnown RBP-1.06□□□□□ -2.58
SS18-214ENST00000580003 DNAH3Q8TD57 4116 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 CSMD3Q7Z407 3707 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 EPG5Q9HCE0 2579 aa-1.06□□□□□ -2.58
SS18-214ENST00000580003 LAMA1P25391 3075 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 CHD6Q8TD26 2715 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 TRAV1-2A0A0B4J238 106 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 SPANXN1Q5VSR9 72 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 LINC01545Q5VT33 79 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 Q8IZM0 81 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 SAR1AQ9NR31 198 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 RPRMQ9NS64 109 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 NDUFA12Q9UI09 145 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 HIGD1AQ9Y241 93 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 GINS2Q9Y248 185 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 SPCS1Q9Y6A9 102 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 NRXN2Q9P2S2 1712 aa-1.07□□□□□ -2.58
SS18-214ENST00000580003 TRBV20-1A0A075B6N2 111 aa-1.08□□□□□ -2.58
SS18-214ENST00000580003 IFNA17P01571 189 aa-1.08□□□□□ -2.58
SS18-214ENST00000580003 DBIP07108 87 aaKnown RBP-1.08□□□□□ -2.58
SS18-214ENST00000580003 LSM2Q9Y333 95 aaKnown RBP-1.08□□□□□ -2.58
SS18-214ENST00000580003 PBRM1Q86U86 1689 aa-1.08□□□□□ -2.58
SS18-214ENST00000580003 TACC2O95359 2948 aa-1.09□□□□□ -2.58
SS18-214ENST00000580003 A6NIN4 97 aa-1.09□□□□□ -2.58
SS18-214ENST00000580003 NCS1P62166 190 aa-1.09□□□□□ -2.58
SS18-214ENST00000580003 SPAG11BQ08648 103 aa-1.09□□□□□ -2.58
SS18-214ENST00000580003 RPL7L1Q6DKI1 246 aaKnown RBP-1.09□□□□□ -2.58
SS18-214ENST00000580003 VSTM2AQ8TAG5 236 aa-1.09□□□□□ -2.58
SS18-214ENST00000580003 PKHD1L1Q86WI1 4243 aa-1.09□□□□□ -2.58
SS18-214ENST00000580003 IBTKQ9P2D0 1353 aaPredicted RBP-1.09□□□□□ -2.58
SS18-214ENST00000580003 PLECQ15149 4684 aaKnown RBP-1.1□□□□□ -2.58
SS18-214ENST00000580003 COL6A5A8TX70 2615 aa-1.1□□□□□ -2.59
SS18-214ENST00000580003 MYO18BQ8IUG5 2567 aa-1.1□□□□□ -2.59
SS18-214ENST00000580003 SPRR1AP35321 89 aa-1.1□□□□□ -2.59
SS18-214ENST00000580003 CCDC153Q494R4 210 aa-1.1□□□□□ -2.59
SS18-214ENST00000580003 MMGT1Q8N4V1 131 aa-1.1□□□□□ -2.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms