RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 ARFGEF1Q9Y6D6 1849 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 FAM208AQ9UK61 1670 aaKnown RBP1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 TRBV25-1A0A075B6N4 114 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 TRAV3A0A0B4J244 114 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 TEX49A0A1B0GTD5 131 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 A0A1B0GWA3 101 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 CRYM-AS1A6NIL9 109 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 LINC01549A6NIU2 74 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 C16orf90A8MZG2 172 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 B4DSR2 109 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 E7EUB6 86 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 J3QRE1 110 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 K7EMI3 77 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 S100A4P26447 101 aaKnown RBP1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 S100A3P33764 101 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 UBE2D1P51668 147 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 KLKP1Q107X0 134 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 KRTAP6-3Q3LI67 103 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 CLEC2BQ92478 149 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 SLC25A2Q9BXI2 301 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 OSTCQ9NRP0 149 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 SLIT1O75093 1534 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 STRCP1A6NGW2 1772 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 SHROOM3Q8TF72 1996 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 CD163L1Q9NR16 1453 aa1.94□□□□□ -2.1
SMCHD1-202ENST00000577300 COL18A1P39060 1754 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 MED12LQ86YW9 2145 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 SLIT2O94813 1529 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 IGHV5-51A0A0C4DH38 117 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 LOC107984156A0A0G2JMH3 177 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 NDUFC1O43677 76 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 CCL5P13501 91 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 IL9P15248 144 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 ESRGQ1W209 222 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 Q6JHZ5 121 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 ARL17AQ8IVW1 177 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 NDUFA12Q9UI09 145 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 V9GYV3 84 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 AFDNP55196 1824 aaKnown RBP1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 ATAD5Q96QE3 1844 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 MIA3Q5JRA6 1907 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 LAMB2P55268 1798 aa1.93□□□□□ -2.1
SMCHD1-202ENST00000577300 DOCK1Q14185 1865 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 PLXNA1Q9UIW2 1896 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 KIAA1549Q9HCM3 1950 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 DYSFO75923 2080 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 POLEQ07864 2286 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 PAPPAQ13219 1627 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 ANAPC1Q9H1A4 1944 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 HEATR5AQ86XA9 2040 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 TRAV7A0A075B6U4 112 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 IGLV3-32A0A0A0MS00 114 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 IGKV1-6A0A0C4DH72 117 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 TMEM30CPA0ZSE6 113 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 J3QLW9 94 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 LEPROTO15243 131 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 PIN1P1O15428 100 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 IGKV1-39P01597 117 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 IGLV1-51P01701 117 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 IGLV2-23P01705 113 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 IGKV1D-39P04432 117 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 MGST1P10620 155 aaKnown RBP1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 SMIM11AP58511 58 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 SUPT4H1P63272 117 aaKnown RBP1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 MRPL51Q4U2R6 128 aaKnown RBP1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 ADM2Q7Z4H4 148 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 VMO1Q7Z5L0 202 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 C20orf197Q8N268 126 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 B9D2Q9BPU9 175 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 PSENENQ9NZ42 101 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 UBE2D4Q9Y2X8 147 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 COL4A6Q14031 1691 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 SHPRHQ149N8 1683 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 GBF1Q92538 1859 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 EML6Q6ZMW3 1958 aa1.92□□□□□ -2.1
SMCHD1-202ENST00000577300 QSER1Q2KHR3 1735 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 PTPRBP23467 1997 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 IGKV2D-26A0A0A0MRZ7 120 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 TRAV22A0A0B4J277 110 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 SMIM27A0A1W2PRY6 76 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 HCG22E2RYF7 251 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 F8WEM9 126 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 HMGN2P05204 90 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 SAA1P0DJI8 122 aaPredicted RBP1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 MIFP14174 115 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 HMGA1P17096 107 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 IFI27P40305 119 aaPredicted RBP1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 DYNLT1P63172 113 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 ATXN8Q156A1 80 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 ASB16-AS1Q495Z4 193 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 SLC48A1Q6P1K1 146 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 SFTA2Q6UW10 78 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 C2orf82Q6UX34 121 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 ZCCHC13Q8WW36 166 aaKnown RBP1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 TMEM141Q96I45 108 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 TTTY13Q9BZ97 58 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 LINC00574Q9H8X3 128 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 DYNLRB1Q9NP97 96 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 PTPRDP23468 1912 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms