RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TMEM242Q9NWH2 141 aa5.94□□□□□ -1.46
NUP88-211ENST00000575976 SRIP30626 198 aa5.93□□□□□ -1.46
NUP88-211ENST00000575976 KCNIP4Q6PIL6 250 aa5.93□□□□□ -1.46
NUP88-211ENST00000575976 ATRAIDQ6UW56 229 aa5.93□□□□□ -1.46
NUP88-211ENST00000575976 AMN1Q8IY45 258 aa5.93□□□□□ -1.46
NUP88-211ENST00000575976 RNF185Q96GF1 192 aa5.93□□□□□ -1.46
NUP88-211ENST00000575976 DNAH7Q8WXX0 4024 aa5.93□□□□□ -1.46
NUP88-211ENST00000575976 PLECQ15149 4684 aaKnown RBP5.92□□□□□ -1.46
NUP88-211ENST00000575976 TRAV26-2A0A0B4J265 109 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 TRBV10-1A0A0K0K1A3 114 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 A0A1B0GW15 77 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 M0QY20 66 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 RAB4AP20338 218 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 HBBP68871 147 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 ESRGQ1W209 222 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 ANKRD39Q53RE8 183 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 LGALS9CQ6DKI2 356 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 NEGR1Q7Z3B1 354 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 ATP5L2Q7Z4Y8 100 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 GATD1Q8NB37 220 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 NEXN-AS1Q8NBZ9 246 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 ZNRF2Q8NHG8 242 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 LINC00476Q8WZB0 136 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 BTF3L4Q96K17 158 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 URGCP-MRPS24S4R325 110 aa5.92□□□□□ -1.46
NUP88-211ENST00000575976 TRBV7-3A0A075B6L6 115 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 H7C1H1 209 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 LY6G6CO95867 125 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 S100A8P05109 93 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 LINC00694P0DN24 101 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 S100PP25815 95 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 CCL18P55774 89 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 RPL36AP83881 106 aaKnown RBP5.91□□□□□ -1.46
NUP88-211ENST00000575976 FAM104BQ5XKR9 115 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 RASL11AQ6T310 242 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 LYPD5Q6UWN5 251 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 ATP6V0E2Q8NHE4 81 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 RPL36ALQ969Q0 106 aaKnown RBP5.91□□□□□ -1.46
NUP88-211ENST00000575976 LINC00588Q9Y4M8 146 aa5.91□□□□□ -1.46
NUP88-211ENST00000575976 TRAV9-1A0A075B6T8 112 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 SMKR1H3BMG3 65 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 GAS8-AS1O95177 125 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 UBE2D3P61077 147 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 UBE2D2P62837 147 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 MRPL51Q4U2R6 128 aaKnown RBP5.9□□□□□ -1.46
NUP88-211ENST00000575976 SH2D6Q7Z4S9 175 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 UBE2DNLQ8IWF7 75 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 RPL39LQ96EH5 51 aaKnown RBP5.9□□□□□ -1.46
NUP88-211ENST00000575976 DNAJC30Q96LL9 226 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 NIT2Q9NQR4 276 aa5.9□□□□□ -1.46
NUP88-211ENST00000575976 IGHV3-38A0A0C4DH36 116 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 NCR2O95944 276 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 ELOBQ15370 118 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 FRZBQ92765 325 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 MRAP2Q96G30 205 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 GTSF1LQ9H1H1 148 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 MRPS16Q9Y3D3 137 aaKnown RBP5.89□□□□□ -1.47
NUP88-211ENST00000575976 TNFRSF18Q9Y5U5 241 aa5.89□□□□□ -1.47
NUP88-211ENST00000575976 TGIF2-C20orf24A0A0A6YYL0 155 aa5.88□□□□□ -1.47
NUP88-211ENST00000575976 RPS10P46783 165 aaKnown RBP5.88□□□□□ -1.47
NUP88-211ENST00000575976 TIRAPP58753 221 aa5.88□□□□□ -1.47
NUP88-211ENST00000575976 TMEM136Q6ZRR5 245 aa5.88□□□□□ -1.47
NUP88-211ENST00000575976 TRBV6-5A0A0K0K1A5 114 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 CKS2P33552 79 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 OR10J3Q5JRS4 329 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 LELP1Q5T871 98 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 DAZ4Q86SG3 579 aaKnown RBP5.87□□□□□ -1.47
NUP88-211ENST00000575976 CBLN2Q8IUK8 224 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 NRACQ8N912 160 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 DEFB104AQ8WTQ1 72 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 YPEL4Q96NS1 127 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 UPK3BQ9BT76 320 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 DAZ3Q9NR90 486 aaKnown RBP5.87□□□□□ -1.47
NUP88-211ENST00000575976 SMCO4Q9NRQ5 59 aa5.87□□□□□ -1.47
NUP88-211ENST00000575976 IGLV2-18A0A075B6J9 118 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 TRBV24-1A0A075B6N3 115 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 D6R8Y8 96 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 NTM-AS1Q6ZSK4 140 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 WFDC10BQ8IUB3 73 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.86□□□□□ -1.47
NUP88-211ENST00000575976 GNB1LQ9BYB4 327 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 Q9H8V8 135 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 ST20Q9HBF5 79 aa5.86□□□□□ -1.47
NUP88-211ENST00000575976 TRBV6-8A0A0A6YYG3 113 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 TRAV8-6A0A0B4J262 113 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 SDHAF1A6NFY7 115 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 TNFRSF6BO95407 300 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 PPP1R17O96001 155 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 NPYP01303 97 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 HLA-DQA1P01909 254 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 APCSP02743 223 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 PPBPP02775 128 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 PMCHP20382 165 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 POLR2KP53803 58 aaKnown RBP5.85□□□□□ -1.47
NUP88-211ENST00000575976 KIAA1644Q3SXP7 199 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 COX19Q49B96 90 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 ORMDL3Q8N138 153 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 TMEM70Q9BUB7 260 aa5.85□□□□□ -1.47
NUP88-211ENST00000575976 VPS13DQ5THJ4 4388 aa5.84□□□□□ -1.47
NUP88-211ENST00000575976 SIVA1O15304 175 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms