RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IGHV3-30-5P0DP03 117 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 RAB4BP61018 213 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 TOR2AQ5JU69 321 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 ALKAL2Q6UX46 152 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 Q6ZSN1 163 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 OR2D3Q8NGH3 330 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 OR10AG1Q8NH19 301 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 AP1S3Q96PC3 154 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 URGCP-MRPS24S4R325 110 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 MUC21A0A0G2JKD1 596 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 MUC21A0A140T8X8 626 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 RAB19A4D1S5 217 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 F5H697 171 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 LINC00694P0DN24 101 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 SSTP61278 116 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 CACNG7P62955 275 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 FER1L6-AS1Q8NA97 138 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 TNFRSF18Q9Y5U5 241 aa5.48□□□□□ -1.53
VPS53-214ENST00000572607 TRBV7-3A0A075B6L6 115 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 C19orf71A6NCJ1 209 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 RBFOX3A6NFN3 312 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 IBA57-AS1B1ANH7 110 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 IGLV2-8P01709 118 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 LAGE3Q14657 143 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 Q6ZRN7 208 aaPredicted RBP5.47□□□□□ -1.53
VPS53-214ENST00000572607 TM2D2Q9BX73 214 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 Q9HAA7 133 aa5.47□□□□□ -1.53
VPS53-214ENST00000572607 A0A087WTM6 91 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 A0A087WX48 190 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 F2Z2F3 143 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 TMEM250H0YL14 139 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 H7C1H1 209 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 MGPP08493 103 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 TRGC1P0CF51 173 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 GZMBP10144 247 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 NKX2-5P52952 324 aaPredicted RBP5.46□□□□□ -1.54
VPS53-214ENST00000572607 CEBPGP53567 150 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 UBE2D3P61077 147 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 UBE2D2P62837 147 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 ELOBQ15370 118 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 OR10G8Q8NGN5 311 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 RMI2Q96E14 147 aa5.46□□□□□ -1.54
VPS53-214ENST00000572607 VPS13BQ7Z7G8 4022 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 TRBV20OR9-2A0A075B6H5 130 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 TRAV8-3A0A0A6YYJ7 113 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 IGLC6P0CF74 106 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 PKIAP61925 76 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 TMEM97Q5BJF2 176 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 NUDT10Q8NFP7 164 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 NUDT11Q96G61 164 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 CHCHD7Q9BUK0 85 aa5.45□□□□□ -1.54
VPS53-214ENST00000572607 EIF5A2Q9GZV4 153 aaKnown RBP5.45□□□□□ -1.54
VPS53-214ENST00000572607 RPP21Q9H633 154 aaKnown RBP5.45□□□□□ -1.54
VPS53-214ENST00000572607 A0A1B0GVG6 124 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 TMEM262E9PQX1 116 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 CDK2AP2O75956 126 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 FAT1Q14517 4588 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 SMIM15Q7Z3B0 74 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 NIT1Q86X76 327 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 NEXN-AS1Q8NBZ9 246 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 DNAJC30Q96LL9 226 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 RNASE7Q9H1E1 156 aaKnown RBP5.44□□□□□ -1.54
VPS53-214ENST00000572607 AP5S1Q9NUS5 200 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 Q9UF83 564 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 COX11Q9Y6N1 276 aa5.44□□□□□ -1.54
VPS53-214ENST00000572607 TRBV6-8A0A0A6YYG3 113 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 GATCO43716 136 aaKnown RBP5.43□□□□□ -1.54
VPS53-214ENST00000572607 CRPP02741 224 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 TWIST1Q15672 202 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 WDR73Q6P4I2 378 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 LYZL1Q6UWQ5 148 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 DAZ4Q86SG3 579 aaKnown RBP5.43□□□□□ -1.54
VPS53-214ENST00000572607 LYPD6BQ8NI32 183 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 OCC1Q8TAD7 63 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 BORCS7Q96B45 105 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 CHCHD5Q9BSY4 110 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 DPH3P1Q9H4G8 78 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 DAZ3Q9NR90 486 aaKnown RBP5.43□□□□□ -1.54
VPS53-214ENST00000572607 KIF25-AS1Q9Y6Z4 181 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 MYCBP2O75592 4640 aa5.43□□□□□ -1.54
VPS53-214ENST00000572607 IGLV5-52A0A0A0MRZ9 124 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 ZNF727A8MUV8 499 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 K7EN84 100 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 NDUFS6O75380 124 aaKnown RBP5.42□□□□□ -1.54
VPS53-214ENST00000572607 PLA2G1BP04054 148 aaKnown RBP5.42□□□□□ -1.54
VPS53-214ENST00000572607 CTRLP40313 264 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 SUMO4Q6EEV6 95 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 FAM231DQ6ZW35 169 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 NTN5Q8WTR8 489 aaPredicted RBP5.42□□□□□ -1.54
VPS53-214ENST00000572607 FAM210AQ96ND0 272 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 SMIM7Q9BQ49 75 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 KLK12Q9UKR0 248 aa5.42□□□□□ -1.54
VPS53-214ENST00000572607 TRBV25-1A0A075B6N4 114 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 IGKV2D-24A0A075B6R9 120 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 A8MWL6 223 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 M0QY20 66 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 NTF3P20783 257 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 Q0VG73 95 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 CT83Q5H943 113 aa5.41□□□□□ -1.54
VPS53-214ENST00000572607 RASL11AQ6T310 242 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms