RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 MSRB1Q9NZV6 116 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 A0A1B0GVY2 172 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 A0A1W2PPQ1 181 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 AKR1D1P51857 326 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 SSTP61278 116 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 C1orf134Q5TEV5 83 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 LYZL1Q6UWQ5 148 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 LINC00336Q6ZUF6 198 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 OR10G8Q8NGN5 311 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 AP1S3Q96PC3 154 aa6.67□□□□□ -1.34
CLK3-220ENST00000567992 TRBV24-1A0A075B6N3 115 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 TRBV10-1A0A0K0K1A3 114 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 XKRY2A2RUG3 117 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 F2Z2F3 143 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 DNAH10OSP0CZ25 163 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 SMIM6P0DI80 62 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 RPS10P46783 165 aaKnown RBP6.66□□□□□ -1.34
CLK3-220ENST00000567992 RAB4BP61018 213 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 CACNG7P62955 275 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 CT83Q5H943 113 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 TTC32Q5I0X7 151 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 C6orf223Q8N319 242 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 ATP6V0E2Q8NHE4 81 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 GTSF1LQ9H1H1 148 aa6.66□□□□□ -1.34
CLK3-220ENST00000567992 LRP1BQ9NZR2 4599 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 PRSS29PA6NIE9 313 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 GATCO43716 136 aaKnown RBP6.65□□□□□ -1.34
CLK3-220ENST00000567992 ERVFC1-1P60608 527 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 UBE2D3P61077 147 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 RPL23P62829 140 aaKnown RBP6.65□□□□□ -1.34
CLK3-220ENST00000567992 UBE2D2P62837 147 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 S100A12P80511 92 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 FABP9Q0Z7S8 132 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 ZNF56Q15929 161 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 LELP1Q5T871 98 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 WDR73Q6P4I2 378 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 Q6ZRN7 208 aaPredicted RBP6.65□□□□□ -1.34
CLK3-220ENST00000567992 NEXN-AS1Q8NBZ9 246 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 ANAPC16Q96DE5 110 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 C12orf57Q99622 126 aa6.65□□□□□ -1.34
CLK3-220ENST00000567992 TGIF2-C20orf24A0A0A6YYL0 155 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 NTF3P20783 257 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 EVI2AP22794 236 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 FOXA3P55318 350 aaPredicted RBP6.64□□□□□ -1.35
CLK3-220ENST00000567992 OSTCQ9NRP0 149 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 V9GYV3 84 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 KIAA1109Q2LD37 5005 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 HERC2O95714 4834 aa6.64□□□□□ -1.35
CLK3-220ENST00000567992 TRBV7-3A0A075B6L6 115 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 A8MWL6 223 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 M0QY20 66 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 PHOX2AO14813 284 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 SMIM17P0DL12 118 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 BTF3P20290 206 aaKnown RBP6.63□□□□□ -1.35
CLK3-220ENST00000567992 TNP2Q05952 138 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 ADIRFQ15847 76 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 LINC01556Q5JQF7 62 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 OR10J3Q5JRS4 329 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 SUMO4Q6EEV6 95 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 Q8N3U1 123 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 IMMP2LQ96T52 175 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 URGCP-MRPS24S4R325 110 aa6.63□□□□□ -1.35
CLK3-220ENST00000567992 TRAV8-6A0A0B4J262 113 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 IGHV3-38A0A0C4DH36 116 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 F5H697 171 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 MGPP08493 103 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 TRGC1P0CF51 173 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 S100PP25815 95 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 RPL36AP83881 106 aaKnown RBP6.62□□□□□ -1.35
CLK3-220ENST00000567992 TWIST1Q15672 202 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 TSKUQ8WUA8 353 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 RPL36ALQ969Q0 106 aaKnown RBP6.62□□□□□ -1.35
CLK3-220ENST00000567992 BTF3L4Q96K17 158 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 PGLYRP4Q96LB8 373 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 GFRA4Q9GZZ7 299 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 DPH3P1Q9H4G8 78 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 TNFRSF18Q9Y5U5 241 aa6.62□□□□□ -1.35
CLK3-220ENST00000567992 FAM231BA6NCW3 169 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIGD1CA8MV81 97 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 K7EP13 123 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 PPP1R2P9O14990 202 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BKO60814 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 TRGC2P03986 189 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BJP06899 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BOP23527 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BBP33778 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BDP58876 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BCP62807 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST2H2BEQ16778 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BHQ93079 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BNQ99877 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 HIST1H2BMQ99879 126 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 RYR1P21817 5038 aa6.61□□□□□ -1.35
CLK3-220ENST00000567992 APOBP04114 4563 aaKnown RBP6.6□□□□□ -1.35
CLK3-220ENST00000567992 NDUFA6P56556 154 aa6.6□□□□□ -1.35
CLK3-220ENST00000567992 TRAV9-1A0A075B6T8 112 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 TRAV9-2A0A087WT02 112 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 IFITM10A6NMD0 228 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 IBA57-AS1B1ANH7 110 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms