RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 Q0VG73 95 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 COA6Q5JTJ3 125 aaKnown RBP5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 MRPL54Q6P161 138 aaKnown RBP5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 NFE4Q86UQ8 179 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 PGLYRP4Q96LB8 373 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 ODF3Q96PU9 254 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 FAT3Q8TDW7 4589 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 TRGV2A0A075B6R0 118 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 KRTAP29-1A8MX34 341 aaPredicted RBP5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 SPINK4O60575 86 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 GPX1P07203 203 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 RAB4AP20338 218 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 CAMPP49913 170 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 CACNG7P62955 275 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 DAZ2Q13117 558 aaKnown RBP5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 LINC01559Q495D7 138 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 TMEM136Q6ZRR5 245 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 FER1L6-AS1Q8NA97 138 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 C11orf72Q8NBR9 251 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 KCNS1Q96KK3 526 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 VGLL1Q99990 258 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 LINC00467Q9BRT7 94 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 TMEM70Q9BUB7 260 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 AGPAT4-IT1Q9H0P7 198 aa5.52□□□□□ -1.53
CCDC88C-214ENST00000557507 TRAV12-3A0A0B4J271 114 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 PHOX2AO14813 284 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 WFDC10BQ8IUB3 73 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 PACRGQ96M98 296 aaPredicted RBP5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 C8orf49Q96NF6 230 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 TPPP3Q9BW30 176 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 SAMD10Q9BYL1 202 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 GSN-AS1Q9NRJ2 163 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 MSRB1Q9NZV6 116 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 FAM30AQ9NZY2 134 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 ICOSQ9Y6W8 199 aa5.51□□□□□ -1.53
CCDC88C-214ENST00000557507 IGLV5-52A0A0A0MRZ9 124 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 TRGV1A0A0A0MS02 117 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 A0A1B0GXF2 115 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 PAX4O43316 350 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 ZNF324O75467 553 aaPredicted RBP5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 IGHV3-53P01767 116 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 PPBPP02775 128 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 PMCHP20382 165 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 S100A4P26447 101 aaKnown RBP5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 ERCC8Q13216 396 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 DNLZQ5SXM8 178 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 LYPD5Q6UWN5 251 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 HIST3H2BBQ8N257 126 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 Q8TAT8 98 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 GTSF1Q8WW33 167 aa5.5□□□□□ -1.53
CCDC88C-214ENST00000557507 PKHD1L1Q86WI1 4243 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 LRCOL1A6NCL2 159 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 FABP4P15090 132 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 SRIP30626 198 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 CTRLP40313 264 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 ASIPP42127 132 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 CRIP1P50238 77 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 S100A12P80511 92 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 TWIST1Q15672 202 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 LYZL1Q6UWQ5 148 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 FAM159AQ6UWV7 190 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 GATD1Q8NB37 220 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 LAMTOR2Q9Y2Q5 125 aa5.49□□□□□ -1.53
CCDC88C-214ENST00000557507 TMSB15BA0A087X1C1 80 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 HSBP1O75506 76 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 PPP1R17O96001 155 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 OR5AL1P0C617 328 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 ESDP10768 282 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 CRYBA4P53673 196 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 SPANXN1Q5VSR9 72 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 LINC00518Q8N0U6 118 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 LINC00528Q8N1L1 170 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 OR10D4PQ8NGN7 298 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 NTN5Q8WTR8 489 aaPredicted RBP5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 CHCHD1Q96BP2 118 aaKnown RBP5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 CNFNQ9BYD5 112 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 TMEM191AQ9H0A3 160 aa5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 MRPL16Q9NX20 251 aaKnown RBP5.48□□□□□ -1.53
CCDC88C-214ENST00000557507 TRAV9-2A0A087WT02 112 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 C7orf71A4D174 169 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 PLA2G1BP04054 148 aaKnown RBP5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 ARMS2P0C7Q2 107 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 IGLC6P0CF74 106 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 GZMBP10144 247 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 RNASE4P34096 147 aaKnown RBP5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 FHL2Q14192 279 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 IQCJQ1A5X6 159 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 PDZD11Q5EBL8 140 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 SERTAD4-AS1Q5TG53 156 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 NEGR1Q7Z3B1 354 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 ORMDL3Q8N138 153 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 SYT8Q8NBV8 401 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 C12orf57Q99622 126 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 HIST1H2BLQ99880 126 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 PRO0255Q9UI72 69 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 TP53TG3Q9ULZ0 132 aa5.47□□□□□ -1.53
CCDC88C-214ENST00000557507 TRGV11A0A075B6L2 103 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 GRIFINA4D1Z8 144 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 KLLNB2CW77 178 aa5.46□□□□□ -1.54
CCDC88C-214ENST00000557507 K7EQD1 137 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms