RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 RNASE4P34096 147 aaKnown RBP1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ORMDL2Q53FV1 153 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 VMO1Q7Z5L0 202 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 TEN1Q86WV5 123 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 Q8N9W7 124 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ZNRF2Q8NHG8 242 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 PPDPFLQ8WWR9 84 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 TMEM190Q8WZ59 177 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 OPRPNQ99935 248 aaPredicted RBP1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ZNF580Q9UK33 172 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 TP53TG1Q9Y2A0 90 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 IGHV4-4A0A075B6R2 117 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 C9JAW5 83 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 LINC01619G3V211 115 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 TRBV12-3P01733 135 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 IGHV3-30P01768 117 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ZNF688P0C7X2 276 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 IGHV3-30-5P0DP03 117 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ZNF415Q09FC8 603 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 TMEM170BQ5T4T1 132 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 C9orf47Q6ZRZ4 202 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 Q8N6K4 173 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ZFAND2AQ8N6M9 145 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ATP6V0E2Q8NHE4 81 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 SLC50A1Q9BRV3 221 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 ANAPC13Q9BS18 74 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 PHLDA3Q9Y5J5 127 aa1.91□□□□□ -2.1
PRPF39-207ENST00000554439 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.9□□□□□ -2.11e-8■■■■■ 27.5
PRPF39-207ENST00000554439 TRAV4A0A0B4J268 109 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 IGHV4-28A0A0C4DH34 117 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 TEX49A0A1B0GTD5 131 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 A8MWV9 139 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 RNASE3P12724 160 aaKnown RBP1.9□□□□□ -2.1
PRPF39-207ENST00000554439 C10orf25Q5T742 122 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 UNQ9165/PRO28630Q6UXU0 137 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 TMEM219Q86XT9 240 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 METTL26Q96S19 204 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 AMELXQ99217 191 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 DPH3P1Q9H4G8 78 aa1.9□□□□□ -2.1
PRPF39-207ENST00000554439 PRRC2AP48634 2157 aaKnown RBP1.9□□□□□ -2.1
PRPF39-207ENST00000554439 PTPRQQ9UMZ3 2332 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 IGHV3OR16-10A0A075B7F0 116 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 TRAV2A0A0B4J234 112 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 IGIPA6NJ69 53 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 CCDC179H3BU77 68 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 SLC25A20O43772 301 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 IGHV4-39P01824 125 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 ASIPP42127 132 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 ZFAND6Q6FIF0 208 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 SBSPONQ8IVN8 264 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 C10orf126Q8N4M7 172 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 SLC25A29Q8N8R3 303 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 ITLN2Q8WWU7 325 aaPredicted RBP1.9□□□□□ -2.11
PRPF39-207ENST00000554439 CITED1Q99966 193 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 PRO1854Q9UHT4 67 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 NBPF19A0A087WUL8 3843 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 DOPEY2Q9Y3R5 2298 aa1.9□□□□□ -2.11
PRPF39-207ENST00000554439 F8WDY8 70 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 J3QQQ9 107 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 M0R1W7 72 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 SCGB2A1O75556 95 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 IGHV3-33P01772 117 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 LINC00315P59091 139 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 FAM74A4Q5TZK3 123 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 MUSTN1Q8IVN3 82 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 TEX29Q8N6K0 151 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 C3orf56Q8N813 242 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 NTN5Q8WTR8 489 aaPredicted RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 ZNF256Q9Y2P7 627 aaPredicted RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 NACAE9PAV3 2078 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 TRAV21A0A0B4J279 112 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 CENPVL3A0A0U1RRI6 287 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 IGHV3-11P01762 117 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 SAA4P35542 130 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 NDUFV3P56181 108 aaKnown RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 NPC2P61916 151 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 GAGE5Q13069 117 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 GAGE6Q13070 117 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 EBI3Q14213 229 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 PMVKQ15126 192 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 RNASE13Q5GAN3 156 aaKnown RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 OR10J6PQ8NGY7 276 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 TMEM263Q8WUH6 116 aaKnown RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 EEF1AKMT3Q96AZ1 226 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 TIMD4Q96H15 378 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 LINC00477Q96M19 166 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 VCX2Q9H322 139 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 KIF25-AS1Q9Y6Z4 181 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 ABCA2Q9BZC7 2435 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 IGF2RP11717 2491 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 TRAV12-2A0A075B6T6 113 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 TRAV12-3A0A0B4J271 114 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 SDHAF1A6NFY7 115 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 CCL24O00175 119 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 SOCS3O14543 225 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 SNCGO76070 127 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 IGKV3-20P01619 116 aa1.89□□□□□ -2.11
PRPF39-207ENST00000554439 LGALS3P17931 250 aaKnown RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 POLR2KP53803 58 aaKnown RBP1.89□□□□□ -2.11
PRPF39-207ENST00000554439 HERVK_113P61574 105 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms