RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 APOC4-APOC2K7ER74 178 aa0.95□□□□□ -2.26
SCFD1-209ENST00000553280 KRTAP5-10Q6L8G5 202 aa0.95□□□□□ -2.26
SCFD1-209ENST00000553280 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.95□□□□□ -2.26
SCFD1-209ENST00000553280 CASKIN1Q8WXD9 1431 aa0.95□□□□□ -2.26
SCFD1-209ENST00000553280 PIGBOS1A0A0B4J2F0 54 aa0.94□□□□□ -2.26
SCFD1-209ENST00000553280 DLEU1O43261 78 aa0.94□□□□□ -2.26
SCFD1-209ENST00000553280 Q8N8P6 123 aa0.94□□□□□ -2.26
SCFD1-209ENST00000553280 RBBP6Q7Z6E9 1792 aaKnown RBP0.93□□□□□ -2.26
SCFD1-209ENST00000553280 GVQW2A0A096LPI5 108 aaPredicted RBP0.93□□□□□ -2.26
SCFD1-209ENST00000553280 SMIM11BQ8TCY0 68 aa0.93□□□□□ -2.26
SCFD1-209ENST00000553280 PLAC8Q9NZF1 115 aa0.93□□□□□ -2.26
SCFD1-209ENST00000553280 ZNF469Q96JG9 3925 aaPredicted RBP0.93□□□□□ -2.26
SCFD1-209ENST00000553280 TNS1Q9HBL0 1735 aaKnown RBP0.92□□□□□ -2.26
SCFD1-209ENST00000553280 SPAARA0A1B0GVQ0 90 aa0.92□□□□□ -2.26
SCFD1-209ENST00000553280 Q56UQ5 140 aa0.92□□□□□ -2.26
SCFD1-209ENST00000553280 PRR15LQ9BU68 103 aa0.92□□□□□ -2.26
SCFD1-209ENST00000553280 LINC00312Q9Y6C7 94 aa0.92□□□□□ -2.26
SCFD1-209ENST00000553280 LRRC37A3O60309 1634 aa0.92□□□□□ -2.26
SCFD1-209ENST00000553280 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 SIX6O95475 246 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 AKAIN1P0CW23 69 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 RBM3P98179 157 aaKnown RBP0.91□□□□□ -2.26
SCFD1-209ENST00000553280 PP6455Q8WZ26 134 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 NALCNQ8IZF0 1738 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 A2ML1A8K2U0 1454 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 PXDNQ92626 1479 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 MED13LQ71F56 2210 aa0.91□□□□□ -2.26
SCFD1-209ENST00000553280 AHNAK2Q8IVF2 5795 aa0.9□□□□□ -2.26
SCFD1-209ENST00000553280 TRAV13-2A0A0B4J235 113 aa0.9□□□□□ -2.27
SCFD1-209ENST00000553280 MIF4GDA9UHW6 222 aaKnown RBP0.9□□□□□ -2.27
SCFD1-209ENST00000553280 HCG22E2RYF7 251 aa0.9□□□□□ -2.27
SCFD1-209ENST00000553280 ACYP2P14621 99 aa0.9□□□□□ -2.27
SCFD1-209ENST00000553280 INSL4Q14641 139 aa0.9□□□□□ -2.27
SCFD1-209ENST00000553280 SCP2D1Q9UJQ7 156 aa0.9□□□□□ -2.27
SCFD1-209ENST00000553280 KCPQ6ZWJ8 1503 aa0.89□□□□□ -2.27
SCFD1-209ENST00000553280 QRICH2Q9H0J4 1663 aa0.89□□□□□ -2.27
SCFD1-209ENST00000553280 SSC5DA1L4H1 1573 aa0.89□□□□□ -2.27
SCFD1-209ENST00000553280 TRGV1A0A0A0MS02 117 aa0.89□□□□□ -2.27
SCFD1-209ENST00000553280 JMJD1CQ15652 2540 aa0.89□□□□□ -2.27
SCFD1-209ENST00000553280 SMG6Q86US8 1419 aaKnown RBP0.89□□□□□ -2.27
SCFD1-209ENST00000553280 NCOA3Q9Y6Q9 1424 aa0.89□□□□□ -2.27
SCFD1-209ENST00000553280 WFDC6Q9BQY6 131 aa0.88□□□□□ -2.27
SCFD1-209ENST00000553280 C2orf88Q9BSF0 95 aa0.88□□□□□ -2.27
SCFD1-209ENST00000553280 NWD2Q9ULI1 1742 aa0.88□□□□□ -2.27
SCFD1-209ENST00000553280 SIPA1L3O60292 1781 aaPredicted RBP0.88□□□□□ -2.27
SCFD1-209ENST00000553280 WDR7Q9Y4E6 1490 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 F5P12259 2224 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 TMEM14DPA8MWL7 114 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 APOC2P02655 101 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 VMO1Q7Z5L0 202 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 SCN3BQ9NY72 215 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 PARP14Q460N5 1801 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 LAMC3Q9Y6N6 1575 aa0.87□□□□□ -2.27
SCFD1-209ENST00000553280 MYH7P12883 1935 aa0.86□□□□□ -2.27
SCFD1-209ENST00000553280 LINC00587B1AMM8 73 aa0.86□□□□□ -2.27
SCFD1-209ENST00000553280 CATR1Q13166 79 aa0.86□□□□□ -2.27
SCFD1-209ENST00000553280 PPP3R2Q96LZ3 170 aa0.86□□□□□ -2.27
SCFD1-209ENST00000553280 AQP10Q96PS8 301 aa0.86□□□□□ -2.27
SCFD1-209ENST00000553280 EIF4G3O43432 1585 aaKnown RBP0.86□□□□□ -2.27
SCFD1-209ENST00000553280 KTN1Q86UP2 1357 aaKnown RBP0.85□□□□□ -2.27
SCFD1-209ENST00000553280 TRAV1-2A0A0B4J238 106 aa0.84□□□□□ -2.27
SCFD1-209ENST00000553280 TNFP01375 233 aa0.84□□□□□ -2.27
SCFD1-209ENST00000553280 PRH1P02810 166 aa0.84□□□□□ -2.27
SCFD1-209ENST00000553280 Q6ZRX8 168 aa0.84□□□□□ -2.27
SCFD1-209ENST00000553280 MYH9P35579 1960 aaKnown RBP0.84□□□□□ -2.28
SCFD1-209ENST00000553280 NAV3Q8IVL0 2385 aa0.84□□□□□ -2.28
SCFD1-209ENST00000553280 CPSF1Q10570 1443 aaKnown RBP0.83□□□□□ -2.28
SCFD1-209ENST00000553280 ARFGEF1Q9Y6D6 1849 aa0.83□□□□□ -2.28
SCFD1-209ENST00000553280 TMEM203Q969S6 136 aa0.83□□□□□ -2.28
SCFD1-209ENST00000553280 MYOM2P54296 1465 aa0.83□□□□□ -2.28
SCFD1-209ENST00000553280 GOLGA3Q08378 1498 aa0.83□□□□□ -2.28
SCFD1-209ENST00000553280 PPIP5K1Q6PFW1 1433 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 CUL7Q14999 1698 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 ARAP2Q8WZ64 1704 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 CCL18P55774 89 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 C10orf128Q5T292 105 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 Q5VV11 94 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 MRPL54Q6P161 138 aaKnown RBP0.82□□□□□ -2.28
SCFD1-209ENST00000553280 BAGE3Q86Y29 109 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 C8orf59Q8N0T1 100 aaPredicted RBP0.82□□□□□ -2.28
SCFD1-209ENST00000553280 PROK2Q9HC23 129 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 ZMYM4Q5VZL5 1548 aa0.82□□□□□ -2.28
SCFD1-209ENST00000553280 IFNGP01579 166 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 SMIM6P0DI80 62 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 GCHFRP30047 84 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 TPPP2P59282 170 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 TTC9CQ8N5M4 171 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 UNC13BO14795 1591 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 PEG3Q9GZU2 1588 aa0.81□□□□□ -2.28
SCFD1-209ENST00000553280 OOSP1A8MZH6 123 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 F6UZH7 168 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 CORTO00230 105 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 SNAPC5O75971 98 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 PPP1R17O96001 155 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 GNG4P50150 75 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 C5orf38Q86SI9 138 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 SPANXDQ9BXN6 97 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 LENEPQ9Y5L5 61 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 MEGF8Q7Z7M0 2845 aa0.8□□□□□ -2.28
SCFD1-209ENST00000553280 MRC1P22897 1456 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms