RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GPHB5Q86YW7 130 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 PRR9Q5T870 116 aa11.86□□□□□ -0.51
CUX1-211ENST00000546411 COPS9Q8WXC6 57 aa11.86□□□□□ -0.51
CUX1-211ENST00000546411 CCL24O00175 119 aa11.86□□□□□ -0.51
CUX1-211ENST00000546411 NOP10Q9NPE3 64 aaKnown RBP11.86□□□□□ -0.51
CUX1-211ENST00000546411 AVPP01185 164 aa11.86□□□□□ -0.51
CUX1-211ENST00000546411 TTC32Q5I0X7 151 aa11.86□□□□□ -0.51
CUX1-211ENST00000546411 SIVA1O15304 175 aa11.85□□□□□ -0.51
CUX1-211ENST00000546411 IGKV2D-26A0A0A0MRZ7 120 aa11.85□□□□□ -0.51
CUX1-211ENST00000546411 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.85□□□□□ -0.51
CUX1-211ENST00000546411 F8W735 103 aaPredicted RBP11.85□□□□□ -0.51
CUX1-211ENST00000546411 ZFAND2AQ8N6M9 145 aa11.85□□□□□ -0.51
CUX1-211ENST00000546411 P0DMU3 169 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 FAM231AP0DMU4 169 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 FAM231CP0DMU5 169 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 MORN3Q6PF18 240 aaPredicted RBP11.84□□□□□ -0.51
CUX1-211ENST00000546411 SH2D6Q7Z4S9 175 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 BAALCQ8WXS3 180 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 TRAV8-3A0A0A6YYJ7 113 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 A0A0J9YX75 114 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 GAGE6Q13070 117 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 CEMP1Q6PRD7 247 aaPredicted RBP11.84□□□□□ -0.51
CUX1-211ENST00000546411 RNF185Q96GF1 192 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 ADGRG4Q8IZF6 3080 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 PTPRBP23467 1997 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 C11orf86A6NJI1 115 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 EDN2P20800 178 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 MALP21145 153 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 RASL10AQ92737 203 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 PAX4O43316 350 aa11.84□□□□□ -0.51
CUX1-211ENST00000546411 K7EMT4 169 aa11.83□□□□□ -0.52
CUX1-211ENST00000546411 Q8N976 141 aa11.83□□□□□ -0.52
CUX1-211ENST00000546411 CLPSL1A2RUU4 121 aa11.83□□□□□ -0.52
CUX1-211ENST00000546411 C1QTNF4Q9BXJ3 329 aa11.83□□□□□ -0.52
CUX1-211ENST00000546411 PRM2P04554 102 aa11.83□□□□□ -0.52
CUX1-211ENST00000546411 TNRC6BQ9UPQ9 1833 aaKnown RBP11.83□□□□□ -0.52
CUX1-211ENST00000546411 MRPS12O15235 138 aaKnown RBP11.82□□□□□ -0.52
CUX1-211ENST00000546411 FGF6P10767 208 aa11.82□□□□□ -0.52
CUX1-211ENST00000546411 C6orf226Q5I0X4 101 aa11.82□□□□□ -0.52
CUX1-211ENST00000546411 AGRNO00468 2067 aa11.82□□□□□ -0.52
CUX1-211ENST00000546411 CFAP161Q6P656 301 aa11.82□□□□□ -0.52
CUX1-211ENST00000546411 TSSC4Q9Y5U2 329 aaPredicted RBP11.82□□□□□ -0.52
CUX1-211ENST00000546411 IGHG4P01861 327 aa11.82□□□□□ -0.52
CUX1-211ENST00000546411 PFN2P35080 140 aa11.81□□□□□ -0.52
CUX1-211ENST00000546411 CLPSL2Q6UWE3 100 aa11.81□□□□□ -0.52
CUX1-211ENST00000546411 PRO1854Q9UHT4 67 aa11.81□□□□□ -0.52
CUX1-211ENST00000546411 C2orf82Q6UX34 121 aa11.81□□□□□ -0.52
CUX1-211ENST00000546411 TEX48A0A1B0GUV7 120 aa11.8□□□□□ -0.52
CUX1-211ENST00000546411 SVIPQ8NHG7 77 aa11.8□□□□□ -0.52
CUX1-211ENST00000546411 HECTD1Q9ULT8 2610 aa11.8□□□□□ -0.52
CUX1-211ENST00000546411 CFAP47Q6ZTR5 3102 aa11.8□□□□□ -0.52
CUX1-211ENST00000546411 IGLL5B9A064 214 aa11.79□□□□□ -0.52
CUX1-211ENST00000546411 TOMM6Q96B49 74 aa11.79□□□□□ -0.52
CUX1-211ENST00000546411 J3QKU1 62 aa11.79□□□□□ -0.52
CUX1-211ENST00000546411 TSPAN13O95857 204 aa11.79□□□□□ -0.52
CUX1-211ENST00000546411 WFDC2Q14508 124 aa11.79□□□□□ -0.52
CUX1-211ENST00000546411 DAND5Q8N907 189 aa11.78□□□□□ -0.52
CUX1-211ENST00000546411 WFDC11Q8NEX6 87 aa11.78□□□□□ -0.52
CUX1-211ENST00000546411 CKS1BP61024 79 aa11.78□□□□□ -0.52
CUX1-211ENST00000546411 CMC4P56277 68 aaPredicted RBP11.77□□□□□ -0.52
CUX1-211ENST00000546411 RBX1P62877 108 aa11.77□□□□□ -0.52
CUX1-211ENST00000546411 CITED2Q99967 270 aaPredicted RBP11.77□□□□□ -0.52
CUX1-211ENST00000546411 ESM1Q9NQ30 184 aa11.77□□□□□ -0.52
CUX1-211ENST00000546411 RHOHQ15669 191 aa11.77□□□□□ -0.53
CUX1-211ENST00000546411 TAL2Q16559 108 aa11.77□□□□□ -0.53
CUX1-211ENST00000546411 SPAG8Q99932 426 aaPredicted RBP11.77□□□□□ -0.53
CUX1-211ENST00000546411 MAPKAPK5-AS1Q8N8E1 139 aa11.77□□□□□ -0.53
CUX1-211ENST00000546411 TMEM243Q9BU79 118 aa11.77□□□□□ -0.53
CUX1-211ENST00000546411 C18orf65Q6ZTR6 163 aa11.76□□□□□ -0.53
CUX1-211ENST00000546411 A4D1N5 150 aa11.76□□□□□ -0.53
CUX1-211ENST00000546411 K7EQG2 157 aa11.75□□□□□ -0.53
CUX1-211ENST00000546411 SRSF2Q01130 221 aaKnown RBP11.75□□□□□ -0.53
CUX1-211ENST00000546411 NXPH4O95158 308 aa11.75□□□□□ -0.53
CUX1-211ENST00000546411 CRPP02741 224 aa11.75□□□□□ -0.53
CUX1-211ENST00000546411 PROK1P58294 105 aa11.75□□□□□ -0.53
CUX1-211ENST00000546411 ATXN8Q156A1 80 aa11.75□□□□□ -0.53
CUX1-211ENST00000546411 USP34Q70CQ2 3546 aa11.75□□□□□ -0.53
CUX1-211ENST00000546411 F8W1H4 67 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 RNASE3P12724 160 aaKnown RBP11.74□□□□□ -0.53
CUX1-211ENST00000546411 E9PLD3 99 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 F5H768 121 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 Q9H8V8 135 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 TRAV8-4A0A0B4J246 113 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 A0A0J9YY99 117 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 SCGB1A1P11684 91 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 U3KQK5 164 aa11.74□□□□□ -0.53
CUX1-211ENST00000546411 IGHV4-31P0DP07 118 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 LOC400499M0QZD8 3231 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 DMXL2Q8TDJ6 3036 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 TRAV12-1A0A0B4J245 112 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 KRTAP10-9P60411 292 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 MUSTN1Q8IVN3 82 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 NRACQ8N912 160 aa11.73□□□□□ -0.53
CUX1-211ENST00000546411 RBMY1BA6NDE4 496 aaKnown RBP11.72□□□□□ -0.53
CUX1-211ENST00000546411 RBMY1EA6NEQ0 496 aaKnown RBP11.72□□□□□ -0.53
CUX1-211ENST00000546411 RBMY1DP0C7P1 496 aaKnown RBP11.72□□□□□ -0.53
CUX1-211ENST00000546411 RBMY1A1P0DJD3 496 aaKnown RBP11.72□□□□□ -0.53
CUX1-211ENST00000546411 RBMY1CP0DJD4 496 aa11.72□□□□□ -0.53
CUX1-211ENST00000546411 C2orf91Q6ZV80 131 aa11.72□□□□□ -0.53
CUX1-211ENST00000546411 TMEM86BQ8N661 226 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms