RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 TNFRSF18Q9Y5U5 241 aa8.01□□□□□ -1.13
YBX3-217ENST00000546164 HSPG2P98160 4391 aa8.01□□□□□ -1.13
YBX3-217ENST00000546164 SRP19P09132 144 aaKnown RBP8□□□□□ -1.13
YBX3-217ENST00000546164 SMIM17P0DL12 118 aa8□□□□□ -1.13
YBX3-217ENST00000546164 LYZL1Q6UWQ5 148 aa8□□□□□ -1.13
YBX3-217ENST00000546164 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
YBX3-217ENST00000546164 SMIM7Q9BQ49 75 aa8□□□□□ -1.13
YBX3-217ENST00000546164 RNASE7Q9H1E1 156 aaKnown RBP8□□□□□ -1.13
YBX3-217ENST00000546164 TRGC1P0CF51 173 aa7.99□□□□□ -1.13
YBX3-217ENST00000546164 SSTP61278 116 aa7.99□□□□□ -1.13
YBX3-217ENST00000546164 LAGE3Q14657 143 aa7.99□□□□□ -1.13
YBX3-217ENST00000546164 CT83Q5H943 113 aa7.99□□□□□ -1.13
YBX3-217ENST00000546164 F5H697 171 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 M0QY20 66 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 NTF3P20783 257 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 CEBPGP53567 150 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 ERVFC1-1P60608 527 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 LINC01551Q86U37 167 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 GTSF1Q8WW33 167 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 KRTAP4-12Q9BQ66 201 aa7.98□□□□□ -1.13
YBX3-217ENST00000546164 ZNF727A8MUV8 499 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 A8MWL6 223 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 H7C1H1 209 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 GATCO43716 136 aaKnown RBP7.97□□□□□ -1.13
YBX3-217ENST00000546164 IGHV3-30P01768 117 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 IGHV3-33P01772 117 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 IGHV3-30-3P0DP02 117 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 IGHV3-30-5P0DP03 117 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 FOXA3P55318 350 aaPredicted RBP7.97□□□□□ -1.13
YBX3-217ENST00000546164 FAM74A3Q4VXF1 159 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 SPATA12Q7Z6I5 190 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 NIT1Q86X76 327 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 DNAJC30Q96LL9 226 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 CHCHD7Q9BUK0 85 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 DPH3P1Q9H4G8 78 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 SMDT1Q9H4I9 107 aa7.97□□□□□ -1.13
YBX3-217ENST00000546164 A0A087WTM6 91 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 TRBV6-8A0A0A6YYG3 113 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 C16orf90A8MZG2 172 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 KRTAP10-2P60368 255 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 TMEM97Q5BJF2 176 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 SUMO4Q6EEV6 95 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 DAZ4Q86SG3 579 aaKnown RBP7.96□□□□□ -1.14
YBX3-217ENST00000546164 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.96□□□□□ -1.14
YBX3-217ENST00000546164 DAZ3Q9NR90 486 aaKnown RBP7.96□□□□□ -1.14
YBX3-217ENST00000546164 OSTCQ9NRP0 149 aa7.96□□□□□ -1.14
YBX3-217ENST00000546164 FAM231BA6NCW3 169 aa7.95□□□□□ -1.14
YBX3-217ENST00000546164 EREGO14944 169 aa7.95□□□□□ -1.14
YBX3-217ENST00000546164 MGPP08493 103 aa7.95□□□□□ -1.14
YBX3-217ENST00000546164 TWIST1Q15672 202 aa7.95□□□□□ -1.14
YBX3-217ENST00000546164 GFRA4Q9GZZ7 299 aa7.95□□□□□ -1.14
YBX3-217ENST00000546164 TRAV8-3A0A0A6YYJ7 113 aa7.94□□□□□ -1.14
YBX3-217ENST00000546164 C9JQL5 133 aa7.94□□□□□ -1.14
YBX3-217ENST00000546164 PEA15Q15121 130 aa7.94□□□□□ -1.14
YBX3-217ENST00000546164 RASL11AQ6T310 242 aa7.94□□□□□ -1.14
YBX3-217ENST00000546164 FRZBQ92765 325 aa7.94□□□□□ -1.14
YBX3-217ENST00000546164 URGCP-MRPS24S4R325 110 aa7.94□□□□□ -1.14
YBX3-217ENST00000546164 PKIAP61925 76 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 SRSF3P84103 164 aaKnown RBP7.93□□□□□ -1.14
YBX3-217ENST00000546164 ELOBQ15370 118 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 TMEM241Q24JQ0 296 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 CDPF1Q6NVV7 123 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 NTM-AS1Q6ZSK4 140 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 TSKUQ8WUA8 353 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 ISOC2Q96AB3 205 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 TM2D2Q9BX73 214 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 Q9HAA7 133 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 NIT2Q9NQR4 276 aa7.93□□□□□ -1.14
YBX3-217ENST00000546164 DNAH8Q96JB1 4490 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 A0A087WX48 190 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 LRCOL1A6NCL2 159 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 HIGD1CA8MV81 97 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 PSCAO43653 123 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 RPL23P62829 140 aaKnown RBP7.92□□□□□ -1.14
YBX3-217ENST00000546164 IQCJQ1A5X6 159 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 SMIM15Q7Z3B0 74 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 C15orf54Q8N8G6 183 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 PGLYRP4Q96LB8 373 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 NAT8Q9UHE5 227 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 V9GYV3 84 aa7.92□□□□□ -1.14
YBX3-217ENST00000546164 CDK2AP2O75956 126 aa7.91□□□□□ -1.14
YBX3-217ENST00000546164 KCNIP4Q6PIL6 250 aa7.91□□□□□ -1.14
YBX3-217ENST00000546164 COX11Q9Y6N1 276 aa7.91□□□□□ -1.14
YBX3-217ENST00000546164 TRBV25-1A0A075B6N4 114 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 A0A1B0GUT8 65 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 ATRAIDQ6UW56 229 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 GATD1Q8NB37 220 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 BORCS7Q96B45 105 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 RMI2Q96E14 147 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 CHCHD5Q9BSY4 110 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 KLK12Q9UKR0 248 aa7.9□□□□□ -1.14
YBX3-217ENST00000546164 IGHV1-24A0A0C4DH33 117 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 TMEM262E9PQX1 116 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 ADIRFQ15847 76 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 MPV17L2Q567V2 206 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 KRTAP9-9Q9BYP9 154 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 KRTAP9-4Q9BYQ2 154 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 TMEM191AQ9H0A3 160 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 PCLOQ9Y6V0 5065 aa7.89□□□□□ -1.15
YBX3-217ENST00000546164 ABCA13Q86UQ4 5058 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms