RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CRIP3Q6Q6R5 217 aa10.73□□□□□ -0.69
COLCA1-204ENST00000540738 FAM110AQ9BQ89 295 aa10.73□□□□□ -0.69
COLCA1-204ENST00000540738 MDFICQ9P1T7 246 aa10.73□□□□□ -0.69
COLCA1-204ENST00000540738 C1orf229Q6ZS94 237 aaPredicted RBP10.72□□□□□ -0.69
COLCA1-204ENST00000540738 EIF4EBP1Q13541 118 aaPredicted RBP10.72□□□□□ -0.69
COLCA1-204ENST00000540738 ZFAND3Q9H8U3 227 aa10.72□□□□□ -0.69
COLCA1-204ENST00000540738 CTRLP40313 264 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 TRAV8-3A0A0A6YYJ7 113 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 BOD1L2Q8IYS8 172 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 C16orf95Q9H693 158 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 A0A1W2PPR1 153 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 C2orf82Q6UX34 121 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 Q6ZTI0 123 aa10.71□□□□□ -0.69
COLCA1-204ENST00000540738 SORL1Q92673 2214 aa10.71□□□□□ -0.7
COLCA1-204ENST00000540738 ASPHD1Q5U4P2 390 aa10.71□□□□□ -0.7
COLCA1-204ENST00000540738 Q9H8V8 135 aa10.71□□□□□ -0.7
COLCA1-204ENST00000540738 FASNP49327 2511 aaKnown RBP10.7□□□□□ -0.7
COLCA1-204ENST00000540738 RPL32P62910 135 aaKnown RBP10.7□□□□□ -0.7
COLCA1-204ENST00000540738 GAGE2EQ4V326 116 aa10.7□□□□□ -0.7
COLCA1-204ENST00000540738 GAGE2DQ9UEU5 116 aa10.7□□□□□ -0.7
COLCA1-204ENST00000540738 MSRB1Q9NZV6 116 aa10.7□□□□□ -0.7
COLCA1-204ENST00000540738 Q6ZPA2 131 aa10.7□□□□□ -0.7
COLCA1-204ENST00000540738 TRAV8-4A0A0B4J246 113 aa10.69□□□□□ -0.7
COLCA1-204ENST00000540738 GATA1P15976 413 aaPredicted RBP10.69□□□□□ -0.7
COLCA1-204ENST00000540738 GAGE2BQ13066 116 aa10.69□□□□□ -0.7
COLCA1-204ENST00000540738 ZNF462Q96JM2 2506 aa10.69□□□□□ -0.7
COLCA1-204ENST00000540738 SPAG11BQ08648 103 aa10.69□□□□□ -0.7
COLCA1-204ENST00000540738 GTSF1LQ9H1H1 148 aa10.69□□□□□ -0.7
COLCA1-204ENST00000540738 OXLD1Q5BKU9 147 aa10.68□□□□□ -0.7
COLCA1-204ENST00000540738 NFE4Q86UQ8 179 aa10.68□□□□□ -0.7
COLCA1-204ENST00000540738 CRYGDP07320 174 aa10.68□□□□□ -0.7
COLCA1-204ENST00000540738 COX7B2Q8TF08 81 aa10.68□□□□□ -0.7
COLCA1-204ENST00000540738 PRSS47A8MTI9 375 aa10.68□□□□□ -0.7
COLCA1-204ENST00000540738 C21orf62-AS1Q17RA5 79 aa10.67□□□□□ -0.7
COLCA1-204ENST00000540738 ZNF664Q8N3J9 261 aa10.67□□□□□ -0.7
COLCA1-204ENST00000540738 C10orf91Q5T1B1 145 aa10.67□□□□□ -0.7
COLCA1-204ENST00000540738 IGHV4-28A0A0C4DH34 117 aa10.66□□□□□ -0.7
COLCA1-204ENST00000540738 UBE2AP49459 152 aa10.66□□□□□ -0.7
COLCA1-204ENST00000540738 A0A1B0GV72 72 aa10.66□□□□□ -0.7
COLCA1-204ENST00000540738 LRRK2Q5S007 2527 aa10.66□□□□□ -0.7
COLCA1-204ENST00000540738 C11orf1Q9H5F2 150 aa10.65□□□□□ -0.7
COLCA1-204ENST00000540738 CCL25O15444 150 aa10.65□□□□□ -0.7
COLCA1-204ENST00000540738 TIMM17AQ99595 171 aa10.65□□□□□ -0.7
COLCA1-204ENST00000540738 ZNF580Q9UK33 172 aa10.65□□□□□ -0.7
COLCA1-204ENST00000540738 ABCA12Q86UK0 2595 aa10.65□□□□□ -0.7
COLCA1-204ENST00000540738 C4orf48Q5BLP8 95 aa10.65□□□□□ -0.71
COLCA1-204ENST00000540738 Q6ZS46 218 aa10.65□□□□□ -0.71
COLCA1-204ENST00000540738 INAFM2P0DMQ5 153 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 A0A0J9YXV3 536 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 A0A1B0GV90 55 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 SOCS3O14543 225 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 KIR3DS1Q14943 382 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 IFITM1P13164 125 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 MPV17L2Q567V2 206 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 C18orf65Q6ZTR6 163 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 ZNF747Q9BV97 191 aa10.64□□□□□ -0.71
COLCA1-204ENST00000540738 IGHV4-30-4P0DP06 118 aa10.63□□□□□ -0.71
COLCA1-204ENST00000540738 TRBV6-4A0A1B0GX49 114 aa10.63□□□□□ -0.71
COLCA1-204ENST00000540738 H7C423 109 aa10.63□□□□□ -0.71
COLCA1-204ENST00000540738 GAGE12HA6NDE8 117 aa10.63□□□□□ -0.71
COLCA1-204ENST00000540738 P0DMU3 169 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 FAM231AP0DMU4 169 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 FAM231CP0DMU5 169 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 BVES-AS1Q5T3Y7 98 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 C20orf173Q96LM9 149 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 NACAE9PAV3 2078 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 NUPR2A6NF83 97 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 CRIP2P52943 208 aaPredicted RBP10.62□□□□□ -0.71
COLCA1-204ENST00000540738 MTURNQ8N3F0 131 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 C20orf203Q8NBC4 194 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 GTSF1Q8WW33 167 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 TRBV20-1A0A075B6N2 111 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 LINC01545Q5VT33 79 aa10.62□□□□□ -0.71
COLCA1-204ENST00000540738 SIVA1O15304 175 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 C19orf71A6NCJ1 209 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 REG3AQ06141 175 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 DKK2Q9UBU2 259 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 RBMY1FQ15415 496 aaKnown RBP10.61□□□□□ -0.71
COLCA1-204ENST00000540738 ZNF124Q15973 351 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 PRO1854Q9UHT4 67 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 TP53TG3Q9ULZ0 132 aa10.61□□□□□ -0.71
COLCA1-204ENST00000540738 LY6G6CO95867 125 aa10.6□□□□□ -0.71
COLCA1-204ENST00000540738 COX8AP10176 69 aa10.6□□□□□ -0.71
COLCA1-204ENST00000540738 PRB2P02812 416 aaPredicted RBP10.6□□□□□ -0.71
COLCA1-204ENST00000540738 ZFAND6Q6FIF0 208 aa10.6□□□□□ -0.71
COLCA1-204ENST00000540738 DSCR8Q96T75 97 aa10.6□□□□□ -0.71
COLCA1-204ENST00000540738 Q6ZVH6 145 aa10.6□□□□□ -0.71
COLCA1-204ENST00000540738 USP9XQ93008 2570 aaPredicted RBP10.6□□□□□ -0.71
COLCA1-204ENST00000540738 MRPL52Q86TS9 123 aaKnown RBP10.59□□□□□ -0.71
COLCA1-204ENST00000540738 C9JAW5 83 aa10.59□□□□□ -0.71
COLCA1-204ENST00000540738 HIST2H2BDQ6DRA6 164 aa10.59□□□□□ -0.71
COLCA1-204ENST00000540738 TOMM6Q96B49 74 aa10.59□□□□□ -0.71
COLCA1-204ENST00000540738 BRI3O95415 125 aa10.59□□□□□ -0.71
COLCA1-204ENST00000540738 IGLV1-51P01701 117 aa10.59□□□□□ -0.71
COLCA1-204ENST00000540738 RPL39P62891 51 aaKnown RBP10.59□□□□□ -0.71
COLCA1-204ENST00000540738 TRAV12-1A0A0B4J245 112 aa10.58□□□□□ -0.72
COLCA1-204ENST00000540738 ZNF80P51504 273 aaPredicted RBP10.58□□□□□ -0.72
COLCA1-204ENST00000540738 LINC00269Q8N2A0 174 aa10.58□□□□□ -0.72
COLCA1-204ENST00000540738 SND1-IT1Q9HBX3 110 aa10.58□□□□□ -0.72
COLCA1-204ENST00000540738 KIAA1549Q9HCM3 1950 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms