RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 FAM30AQ9NZY2 134 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 TRAV8-6A0A0B4J262 113 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 TRBV10-1A0A0K0K1A3 114 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 TMEM250H0YL14 139 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 CDK2AP2O75956 126 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 NTF3P20783 257 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 BLOC1S1P78537 153 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 ZNF56Q15929 161 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 MPV17L2Q567V2 206 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 SPANXN1Q5VSR9 72 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 KRTAP26-1Q6PEX3 210 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 ENHOQ6UWT2 76 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 SMIM12Q96EX1 92 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 FAM210AQ96ND0 272 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 CNFNQ9BYD5 112 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 GFRA4Q9GZZ7 299 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 KLK12Q9UKR0 248 aa3.34□□□□□ -1.87
USH1C-210ENST00000534556 FLG2Q5D862 2391 aaPredicted RBP3.34□□□□□ -1.87
USH1C-210ENST00000534556 TRAV9-2A0A087WT02 112 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 TRBV6-8A0A0A6YYG3 113 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 TRAV26-2A0A0B4J265 109 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 IFNA1P01562 189 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 P01737 135 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 MGPP08493 103 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 RPL36AP83881 106 aaKnown RBP3.33□□□□□ -1.88
USH1C-210ENST00000534556 LINC01620Q4KN68 170 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 ATRAIDQ6UW56 229 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 LINC01551Q86U37 167 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 NFE4Q86UQ8 179 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 Q8N976 141 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 GATD1Q8NB37 220 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 BAALCQ8WXS3 180 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 RPL36ALQ969Q0 106 aaKnown RBP3.33□□□□□ -1.88
USH1C-210ENST00000534556 RPL39LQ96EH5 51 aaKnown RBP3.33□□□□□ -1.88
USH1C-210ENST00000534556 TPPP3Q9BW30 176 aa3.33□□□□□ -1.88
USH1C-210ENST00000534556 RPP21Q9H633 154 aaKnown RBP3.33□□□□□ -1.88
USH1C-210ENST00000534556 IGLV4-60A0A075B6I1 120 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 A0A087WWC5 75 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 F5H697 171 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 K7EP13 123 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 CEBPGP53567 150 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 ERVFC1-1P60608 527 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 RPS20P60866 119 aaKnown RBP3.32□□□□□ -1.88
USH1C-210ENST00000534556 LAGE3Q14657 143 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 WDR73Q6P4I2 378 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 TEX261Q6UWH6 196 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 FAM231DQ6ZW35 169 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 Q8N1X5 172 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 C10orf126Q8N4M7 172 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 Q8N814 137 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 C20orf203Q8NBC4 194 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 DAZAP1Q96EP5 407 aaKnown RBP3.32□□□□□ -1.88
USH1C-210ENST00000534556 RNF185Q96GF1 192 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 PGLYRP4Q96LB8 373 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 AP1S3Q96PC3 154 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 SMIM7Q9BQ49 75 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 PGPEP1Q9NXJ5 209 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 V9GYV3 84 aa3.32□□□□□ -1.88
USH1C-210ENST00000534556 FAM231BA6NCW3 169 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 F2Z2F3 143 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 GATCO43716 136 aaKnown RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 NDUFS6O75380 124 aaKnown RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 SMR3BP02814 79 aaPredicted RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 TAGLN2P37802 199 aaKnown RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 RPS10P46783 165 aaKnown RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 RPL23P62829 140 aaKnown RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 RBX1P62877 108 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 CACNG7P62955 275 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 GAGE6Q13070 117 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 IQCJQ1A5X6 159 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 RASL11AQ6T310 242 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 CLPSL2Q6UWE3 100 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 C15orf54Q8N8G6 183 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 UBE2WQ96B02 151 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 EIF5A2Q9GZV4 153 aaKnown RBP3.31□□□□□ -1.88
USH1C-210ENST00000534556 DPH3P1Q9H4G8 78 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 PRR34Q9NV39 138 aa3.31□□□□□ -1.88
USH1C-210ENST00000534556 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.3□□□□□ -1.88
USH1C-210ENST00000534556 IGKV2D-24A0A075B6R9 120 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 TRAV8-3A0A0A6YYJ7 113 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 ZNF727A8MUV8 499 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 HIGD1CA8MV81 97 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 SMKR1H3BMG3 65 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 PSCAO43653 123 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 GCSHP23434 173 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 IFITM2Q01629 132 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 TWIST1Q15672 202 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 CDPF1Q6NVV7 123 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 Q6ZSA8 131 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 NUP35Q8NFH5 326 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 ISOC2Q96AB3 205 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 NIT2Q9NQR4 276 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 OSTCQ9NRP0 149 aa3.3□□□□□ -1.88
USH1C-210ENST00000534556 A0A087WX48 190 aa3.29□□□□□ -1.88
USH1C-210ENST00000534556 IGLV5-52A0A0A0MRZ9 124 aa3.29□□□□□ -1.88
USH1C-210ENST00000534556 A8MWL6 223 aa3.29□□□□□ -1.88
USH1C-210ENST00000534556 TMEM262E9PQX1 116 aa3.29□□□□□ -1.88
USH1C-210ENST00000534556 PANO1I0J062 215 aa3.29□□□□□ -1.88
USH1C-210ENST00000534556 ANGP03950 147 aaKnown RBP3.29□□□□□ -1.88
USH1C-210ENST00000534556 SLPIP03973 132 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms