RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 DAZ4Q86SG3 579 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 DAZ3Q9NR90 486 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 TM2D2Q9BX73 214 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 VPREB3Q9UKI3 123 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 SNURFQ9Y675 71 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 MUC6Q6W4X9 2439 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 THADAQ6YHU6 1953 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 ODF1Q14990 250 aa6.81□□□□□ -1.32
LIMCH1-218ENST00000513024 C2orf70A6NJV1 201 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 SPRY2O43597 315 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 C17orf58Q2M2W7 97 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 FAM19A3Q7Z5A8 133 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 Q9HAA7 133 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 AGPAT4-IT1Q9H0P7 198 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 TRBV27A0A0K0K1C4 114 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 IGKV4-1P06312 121 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 ZNF503-AS2A6NEH8 195 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 E7EQL1 145 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 COX7A2LO14548 114 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 DIAPH2-AS1Q14236 149 aa6.8□□□□□ -1.32
LIMCH1-218ENST00000513024 H3BRN7 92 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 MAPK1IP1LQ8NDC0 245 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 COL6A3P12111 3177 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 DENND4AQ7Z401 1863 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 TRANK1O15050 2925 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 DAND5Q8N907 189 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 DOPEY1Q5JWR5 2465 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 ZNF833PQ6ZTB9 187 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 RNF138Q8WVD3 245 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 C15orf65H3BRN8 121 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 LINC00526Q96FQ7 95 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 LTBP2Q14767 1821 aa6.79□□□□□ -1.32
LIMCH1-218ENST00000513024 C11orf86A6NJI1 115 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 CCL18P55774 89 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 NRGNQ92686 78 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 ZNF503Q96F45 646 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 PRO3102Q9H379 93 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 CASC2Q6XLA1 102 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 SORL1Q92673 2214 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 ACACBO00763 2458 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 MRPS12O15235 138 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 RUSC1-AS1Q66K80 236 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 SMAD5-AS1Q9Y6J3 95 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 DSCAML1Q8TD84 2053 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 CSPG4Q6UVK1 2322 aa6.78□□□□□ -1.32
LIMCH1-218ENST00000513024 EML6Q6ZMW3 1958 aa6.77□□□□□ -1.32
LIMCH1-218ENST00000513024 ANGP03950 147 aaKnown RBP6.77□□□□□ -1.32
LIMCH1-218ENST00000513024 XCL1P47992 114 aa6.77□□□□□ -1.32
LIMCH1-218ENST00000513024 SOSTDC1Q6X4U4 206 aa6.77□□□□□ -1.32
LIMCH1-218ENST00000513024 PCDH15Q96QU1 1955 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 C5orf38Q86SI9 138 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 FREM1Q5H8C1 2179 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 ARHGAP21Q5T5U3 1957 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 IGHV4OR15-8A0A075B7B6 117 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 A0A087WW49 117 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 INSL3P51460 131 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 ZNF491Q8N8L2 437 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 IGKV2-29A2NJV5 120 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 LOXP28300 417 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 OXLD1Q5BKU9 147 aa6.77□□□□□ -1.33
LIMCH1-218ENST00000513024 FRMD6-AS1P0C7T7 363 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 MSRB1Q9NZV6 116 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 MUC22E2RYF6 1773 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 TEX22C9J3V5 150 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 GNRH2O43555 120 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 PTPN13Q12923 2485 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 PPDPFQ9H3Y8 114 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 MRPL36Q9P0J6 103 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 H0Y9J4 135 aa6.76□□□□□ -1.33
LIMCH1-218ENST00000513024 IGLV3-9A0A075B6K5 115 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 LENEPQ9Y5L5 61 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 P0DMU3 169 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 FAM231AP0DMU4 169 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 FAM231CP0DMU5 169 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 DIRC1Q969H9 104 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 PROK2Q9HC23 129 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 CTRLP40313 264 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 PIK3CD-AS1Q5SR53 167 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 CFAP126Q5VTH2 177 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 TOMM6Q96B49 74 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 RPL39LQ96EH5 51 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 MYCNOSP40205 109 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 MIAQ16674 131 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 ZNF843Q8N446 348 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 MRPL53Q96EL3 112 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 FGF23Q9GZV9 251 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 PLXNB1O43157 2135 aa6.75□□□□□ -1.33
LIMCH1-218ENST00000513024 HOXB4P17483 251 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 MIFP14174 115 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 PRR4Q16378 134 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 CLPSL2Q6UWE3 100 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 MUC3AQ02505 3323 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 C2orf16Q68DN1 1984 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 TTC28Q96AY4 2481 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 IGHV1-58A0A0C4DH39 117 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 IGLV3-1P01715 115 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 TRIOO75962 3097 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 A0A096LPF7 62 aa6.74□□□□□ -1.33
LIMCH1-218ENST00000513024 MIR7-3HGQ8N6C7 128 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms