RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ESRGQ1W209 222 aa8.24□□□□□ -1.09
CUX1-210ENST00000497815 RASL11AQ6T310 242 aa8.24□□□□□ -1.09
CUX1-210ENST00000497815 GATD1Q8NB37 220 aa8.24□□□□□ -1.09
CUX1-210ENST00000497815 NEXN-AS1Q8NBZ9 246 aa8.24□□□□□ -1.09
CUX1-210ENST00000497815 RPL36ALQ969Q0 106 aaKnown RBP8.24□□□□□ -1.09
CUX1-210ENST00000497815 RNF185Q96GF1 192 aa8.24□□□□□ -1.09
CUX1-210ENST00000497815 SMKR1H3BMG3 65 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 GAS8-AS1O95177 125 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 NCR2O95944 276 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 CCL18P55774 89 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 FAM104BQ5XKR9 115 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 ATP6V0E2Q8NHE4 81 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 LINC00476Q8WZB0 136 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 RPL39LQ96EH5 51 aaKnown RBP8.23□□□□□ -1.09
CUX1-210ENST00000497815 TNFRSF18Q9Y5U5 241 aa8.23□□□□□ -1.09
CUX1-210ENST00000497815 TRBV7-3A0A075B6L6 115 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 TRAV9-1A0A075B6T8 112 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 IGHV3-38A0A0C4DH36 116 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 LINC00694P0DN24 101 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 MRPL51Q4U2R6 128 aaKnown RBP8.22□□□□□ -1.09
CUX1-210ENST00000497815 LGALS9CQ6DKI2 356 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 LYPD5Q6UWN5 251 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 SH2D6Q7Z4S9 175 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 LINC00588Q9Y4M8 146 aa8.22□□□□□ -1.09
CUX1-210ENST00000497815 TGIF2-C20orf24A0A0A6YYL0 155 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 UBE2D3P61077 147 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 UBE2D2P62837 147 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 OR10J3Q5JRS4 329 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 CBLN2Q8IUK8 224 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 MRAP2Q96G30 205 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 DNAJC30Q96LL9 226 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 NIT2Q9NQR4 276 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 TENM2Q9NT68 2774 aa8.21□□□□□ -1.1
CUX1-210ENST00000497815 CKS2P33552 79 aa8.2□□□□□ -1.1
CUX1-210ENST00000497815 RPS10P46783 165 aaKnown RBP8.2□□□□□ -1.1
CUX1-210ENST00000497815 ELOBQ15370 118 aa8.2□□□□□ -1.1
CUX1-210ENST00000497815 DEFB104AQ8WTQ1 72 aa8.2□□□□□ -1.1
CUX1-210ENST00000497815 GTSF1LQ9H1H1 148 aa8.2□□□□□ -1.1
CUX1-210ENST00000497815 DYNC2H1Q8NCM8 4307 aaKnown RBP8.2□□□□□ -1.1
CUX1-210ENST00000497815 PLECQ15149 4684 aaKnown RBP8.19□□□□□ -1.1
CUX1-210ENST00000497815 LCE6AA0A183 80 aa8.19□□□□□ -1.1
CUX1-210ENST00000497815 D6R8Y8 96 aa8.19□□□□□ -1.1
CUX1-210ENST00000497815 TMEM136Q6ZRR5 245 aa8.19□□□□□ -1.1
CUX1-210ENST00000497815 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.19□□□□□ -1.1
CUX1-210ENST00000497815 SMCO4Q9NRQ5 59 aa8.19□□□□□ -1.1
CUX1-210ENST00000497815 MRPS16Q9Y3D3 137 aaKnown RBP8.19□□□□□ -1.1
CUX1-210ENST00000497815 FRZBQ92765 325 aa8.18□□□□□ -1.1
CUX1-210ENST00000497815 ST20Q9HBF5 79 aa8.18□□□□□ -1.1
CUX1-210ENST00000497815 IGLV2-18A0A075B6J9 118 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 ATP6V1G1O75348 118 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 SCO1O75880 301 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 APCSP02743 223 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 LCE2CQ5TA81 110 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 DAZ4Q86SG3 579 aaKnown RBP8.17□□□□□ -1.1
CUX1-210ENST00000497815 WFDC10BQ8IUB3 73 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 NRACQ8N912 160 aa8.17□□□□□ -1.1
CUX1-210ENST00000497815 DAZ3Q9NR90 486 aaKnown RBP8.17□□□□□ -1.1
CUX1-210ENST00000497815 TRBV24-1A0A075B6N3 115 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 TRBV6-5A0A0K0K1A5 114 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 SDHAF1A6NFY7 115 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 TNFRSF6BO95407 300 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 HLA-DQA1P01909 254 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 TIRAPP58753 221 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 KIAA1644Q3SXP7 199 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 LELP1Q5T871 98 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 ORMDL3Q8N138 153 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 PRELID3AQ96N28 172 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 YPEL4Q96NS1 127 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 GNB1LQ9BYB4 327 aa8.16□□□□□ -1.1
CUX1-210ENST00000497815 TRAV8-6A0A0B4J262 113 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 PPP1R17O96001 155 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 NPYP01303 97 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 PPBPP02775 128 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 PMCHP20382 165 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 COX19Q49B96 90 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 UPK3BQ9BT76 320 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 MRPL18Q9H0U6 180 aaKnown RBP8.15□□□□□ -1.1
CUX1-210ENST00000497815 Q9H8V8 135 aa8.15□□□□□ -1.1
CUX1-210ENST00000497815 TRBV6-8A0A0A6YYG3 113 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 SIVA1O15304 175 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 MT-ND6P03923 174 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 SUMO2P61956 95 aaKnown RBP8.14□□□□□ -1.11
CUX1-210ENST00000497815 FABP9Q0Z7S8 132 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 COTL1Q14019 142 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 NTM-AS1Q6ZSK4 140 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 TMEM70Q9BUB7 260 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 TRAPPC1Q9Y5R8 145 aa8.14□□□□□ -1.11
CUX1-210ENST00000497815 I3L3M4 83 aa8.13□□□□□ -1.11
CUX1-210ENST00000497815 M0R2N4 97 aa8.13□□□□□ -1.11
CUX1-210ENST00000497815 S100A1P23297 94 aa8.13□□□□□ -1.11
CUX1-210ENST00000497815 TMEM97Q5BJF2 176 aa8.13□□□□□ -1.11
CUX1-210ENST00000497815 CHCHD5Q9BSY4 110 aa8.13□□□□□ -1.11
CUX1-210ENST00000497815 TRBV25-1A0A075B6N4 114 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 IGHV1-24A0A0C4DH33 117 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 LOC389332A0A1B0GUA5 103 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 VCYO14598 125 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 IGHV3-30P01768 117 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 IGHV3-33P01772 117 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 IGHV3-30-3P0DP02 117 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 IGHV3-30-5P0DP03 117 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms