RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CACNG7P62955 275 aa12.09□□□□□ -0.47
COL9A3-214ENST00000490398 SUMO4Q6EEV6 95 aa12.09□□□□□ -0.47
COL9A3-214ENST00000490398 GTSF1Q8WW33 167 aa12.09□□□□□ -0.47
COL9A3-214ENST00000490398 EIF5A2Q9GZV4 153 aaKnown RBP12.09□□□□□ -0.47
COL9A3-214ENST00000490398 BIN3Q9NQY0 253 aa12.09□□□□□ -0.47
COL9A3-214ENST00000490398 M0QY20 66 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 SRP19P09132 144 aaKnown RBP12.08□□□□□ -0.48
COL9A3-214ENST00000490398 SMIM17P0DL12 118 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 NTF3P20783 257 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 CTRLP40313 264 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 WFDC2Q14508 124 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 NTM-AS1Q6ZSK4 140 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 KRTAP4-5Q9BYR2 181 aa12.08□□□□□ -0.48
COL9A3-214ENST00000490398 XKRY2A2RUG3 117 aa12.07□□□□□ -0.48
COL9A3-214ENST00000490398 F2Z2F3 143 aa12.07□□□□□ -0.48
COL9A3-214ENST00000490398 TRBV6-8A0A0A6YYG3 113 aa12.06□□□□□ -0.48
COL9A3-214ENST00000490398 C9JQL5 133 aa12.06□□□□□ -0.48
COL9A3-214ENST00000490398 PSCAO43653 123 aa12.06□□□□□ -0.48
COL9A3-214ENST00000490398 LAGE3Q14657 143 aa12.06□□□□□ -0.48
COL9A3-214ENST00000490398 MAPKAPK5-AS1Q8N8E1 139 aa12.06□□□□□ -0.48
COL9A3-214ENST00000490398 EREGO14944 169 aa12.05□□□□□ -0.48
COL9A3-214ENST00000490398 GATCO43716 136 aaKnown RBP12.05□□□□□ -0.48
COL9A3-214ENST00000490398 CDK2AP2O75956 126 aa12.05□□□□□ -0.48
COL9A3-214ENST00000490398 FOXA3P55318 350 aaPredicted RBP12.05□□□□□ -0.48
COL9A3-214ENST00000490398 SRSF3P84103 164 aaKnown RBP12.05□□□□□ -0.48
COL9A3-214ENST00000490398 SMIM7Q9BQ49 75 aa12.05□□□□□ -0.48
COL9A3-214ENST00000490398 CNFNQ9BYD5 112 aa12.05□□□□□ -0.48
COL9A3-214ENST00000490398 PGPEP1Q9NXJ5 209 aa12.05□□□□□ -0.48
COL9A3-214ENST00000490398 KLK12Q9UKR0 248 aa12.05□□□□□ -0.48
COL9A3-214ENST00000490398 KRTAP10-1P60331 282 aa12.04□□□□□ -0.48
COL9A3-214ENST00000490398 TWIST1Q15672 202 aa12.04□□□□□ -0.48
COL9A3-214ENST00000490398 WDR73Q6P4I2 378 aa12.04□□□□□ -0.48
COL9A3-214ENST00000490398 TEX261Q6UWH6 196 aa12.04□□□□□ -0.48
COL9A3-214ENST00000490398 FAM231DQ6ZW35 169 aa12.04□□□□□ -0.48
COL9A3-214ENST00000490398 DEFB104AQ8WTQ1 72 aa12.04□□□□□ -0.48
COL9A3-214ENST00000490398 LINC01551Q86U37 167 aa12.03□□□□□ -0.48
COL9A3-214ENST00000490398 DPH3P1Q9H4G8 78 aa12.03□□□□□ -0.48
COL9A3-214ENST00000490398 ZNF727A8MUV8 499 aa12.02□□□□□ -0.49
COL9A3-214ENST00000490398 TMEM262E9PQX1 116 aa12.02□□□□□ -0.49
COL9A3-214ENST00000490398 LECT2O14960 151 aa12.02□□□□□ -0.49
COL9A3-214ENST00000490398 TRGC1P0CF51 173 aa12.02□□□□□ -0.49
COL9A3-214ENST00000490398 MPV17L2Q567V2 206 aa12.02□□□□□ -0.49
COL9A3-214ENST00000490398 URGCP-MRPS24S4R325 110 aa12.02□□□□□ -0.49
COL9A3-214ENST00000490398 A0A087WX48 190 aa12.01□□□□□ -0.49
COL9A3-214ENST00000490398 TRAV8-3A0A0A6YYJ7 113 aa12.01□□□□□ -0.49
COL9A3-214ENST00000490398 TRAV26-2A0A0B4J265 109 aa12.01□□□□□ -0.49
COL9A3-214ENST00000490398 NDUFS6O75380 124 aaKnown RBP12.01□□□□□ -0.49
COL9A3-214ENST00000490398 UBE2WQ96B02 151 aa12.01□□□□□ -0.49
COL9A3-214ENST00000490398 PGLYRP4Q96LB8 373 aa12.01□□□□□ -0.49
COL9A3-214ENST00000490398 RASL11AQ6T310 242 aa12□□□□□ -0.49
COL9A3-214ENST00000490398 Q8N814 137 aa12□□□□□ -0.49
COL9A3-214ENST00000490398 Q8N976 141 aa12□□□□□ -0.49
COL9A3-214ENST00000490398 GATD1Q8NB37 220 aa12□□□□□ -0.49
COL9A3-214ENST00000490398 CHCHD5Q9BSY4 110 aa12□□□□□ -0.49
COL9A3-214ENST00000490398 GAGE6Q13070 117 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 CDPF1Q6NVV7 123 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 ATRAIDQ6UW56 229 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 ENHOQ6UWT2 76 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 BAALCQ8WXS3 180 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 CHCHD7Q9BUK0 85 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 TM2D2Q9BX73 214 aa11.99□□□□□ -0.49
COL9A3-214ENST00000490398 IGKV2D-24A0A075B6R9 120 aa11.98□□□□□ -0.49
COL9A3-214ENST00000490398 A8MWL6 223 aa11.98□□□□□ -0.49
COL9A3-214ENST00000490398 H7C1H1 209 aa11.98□□□□□ -0.49
COL9A3-214ENST00000490398 CT83Q5H943 113 aa11.98□□□□□ -0.49
COL9A3-214ENST00000490398 C15orf54Q8N8G6 183 aa11.98□□□□□ -0.49
COL9A3-214ENST00000490398 NIT2Q9NQR4 276 aa11.98□□□□□ -0.49
COL9A3-214ENST00000490398 XGP55808 180 aa11.97□□□□□ -0.49
COL9A3-214ENST00000490398 RPL39LQ96EH5 51 aaKnown RBP11.97□□□□□ -0.49
COL9A3-214ENST00000490398 IGLV5-52A0A0A0MRZ9 124 aa11.96□□□□□ -0.49
COL9A3-214ENST00000490398 GAS8-AS1O95177 125 aa11.96□□□□□ -0.49
COL9A3-214ENST00000490398 GCSHP23434 173 aa11.96□□□□□ -0.49
COL9A3-214ENST00000490398 RPL23P62829 140 aaKnown RBP11.96□□□□□ -0.49
COL9A3-214ENST00000490398 IQCJQ1A5X6 159 aa11.96□□□□□ -0.49
COL9A3-214ENST00000490398 OSTCQ9NRP0 149 aa11.96□□□□□ -0.49
COL9A3-214ENST00000490398 V9GYV3 84 aa11.96□□□□□ -0.49
COL9A3-214ENST00000490398 TRBV25-1A0A075B6N4 114 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 RBX1P62877 108 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 HAMPP81172 84 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 ELOBQ15370 118 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 TMEM241Q24JQ0 296 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 KCNIP4Q6PIL6 250 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.95□□□□□ -0.5
COL9A3-214ENST00000490398 TSKUQ8WUA8 353 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 ISOC2Q96AB3 205 aa11.95□□□□□ -0.5
COL9A3-214ENST00000490398 IGHV1-24A0A0C4DH33 117 aa11.94□□□□□ -0.5
COL9A3-214ENST00000490398 HIGD1CA8MV81 97 aa11.94□□□□□ -0.5
COL9A3-214ENST00000490398 ANGP03950 147 aaKnown RBP11.94□□□□□ -0.5
COL9A3-214ENST00000490398 TMEM97Q5BJF2 176 aa11.94□□□□□ -0.5
COL9A3-214ENST00000490398 CLPSL2Q6UWE3 100 aa11.94□□□□□ -0.5
COL9A3-214ENST00000490398 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.92□□□□□ -0.5
COL9A3-214ENST00000490398 ADIRFQ15847 76 aa11.92□□□□□ -0.5
COL9A3-214ENST00000490398 FAM74A3Q4VXF1 159 aa11.92□□□□□ -0.5
COL9A3-214ENST00000490398 Q8N1X5 172 aa11.92□□□□□ -0.5
COL9A3-214ENST00000490398 NTN5Q8WTR8 489 aaPredicted RBP11.92□□□□□ -0.5
COL9A3-214ENST00000490398 RMI2Q96E14 147 aa11.92□□□□□ -0.5
COL9A3-214ENST00000490398 GFRA4Q9GZZ7 299 aa11.92□□□□□ -0.5
COL9A3-214ENST00000490398 PEA15Q15121 130 aa11.91□□□□□ -0.5
COL9A3-214ENST00000490398 LINC00269Q8N2A0 174 aa11.91□□□□□ -0.5
COL9A3-214ENST00000490398 C20orf203Q8NBC4 194 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms