RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 C19orf71A6NCJ1 209 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 UBE2L6O14933 153 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 CRYGDP07320 174 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 BTF3P20290 206 aaKnown RBP5.56□□□□□ -1.52
USP40-216ENST00000485943 NTF3P20783 257 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 PKIAP61925 76 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 RIGQ13278 110 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 UPK3BQ9BT76 320 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 SAMD10Q9BYL1 202 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 TRBV20OR9-2A0A075B6H5 130 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 KRTAP23-1A1A580 65 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 K7EP13 123 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 PPP1R2P9O14990 202 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 IGLV2-8P01709 118 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 IGHV3-30P01768 117 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 IGHV3-33P01772 117 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 CRPP02741 224 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 S100A8P05109 93 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 IGHV3-30-3P0DP02 117 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 IGHV3-30-5P0DP03 117 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 ELOBQ15370 118 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 LELP1Q5T871 98 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 FAM231DQ6ZW35 169 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 LINC01551Q86U37 167 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 SCRT2Q9NQ03 307 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 OSTCQ9NRP0 149 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 NAT8BQ9UHF3 227 aa5.55□□□□□ -1.52
USP40-216ENST00000485943 A0A1B0GUT8 65 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 HIGD1CA8MV81 97 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.54□□□□□ -1.52
USP40-216ENST00000485943 K7EN84 100 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 PNRC1Q12796 327 aaPredicted RBP5.54□□□□□ -1.52
USP40-216ENST00000485943 RASL11AQ6T310 242 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 DAZ4Q86SG3 579 aaKnown RBP5.54□□□□□ -1.52
USP40-216ENST00000485943 TSKUQ8WUA8 353 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 RMI2Q96E14 147 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 DNAJC30Q96LL9 226 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 KRTAP4-12Q9BQ66 201 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 CHCHD5Q9BSY4 110 aa5.54□□□□□ -1.52
USP40-216ENST00000485943 DAZ3Q9NR90 486 aaKnown RBP5.54□□□□□ -1.52
USP40-216ENST00000485943 TRBV25-1A0A075B6N4 114 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 KRTAP9-6A0A140TA67 174 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 F8W036 122 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 MT-ND4LP03901 98 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 IGLC6P0CF74 106 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 CTRLP40313 264 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 RPL23P62829 140 aaKnown RBP5.53□□□□□ -1.52
USP40-216ENST00000485943 COTL1Q14019 142 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 KRTAP19-4Q3LI73 84 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 CLLU1Q5K131 121 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 WDR73Q6P4I2 378 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 WFDC10BQ8IUB3 73 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 ISOC2Q96AB3 205 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 GFRA4Q9GZZ7 299 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 Q9HAA7 133 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 MSRB1Q9NZV6 116 aa5.53□□□□□ -1.52
USP40-216ENST00000485943 FAM231BA6NCW3 169 aa5.52□□□□□ -1.53
USP40-216ENST00000485943 TIRAPP58753 221 aa5.52□□□□□ -1.53
USP40-216ENST00000485943 NDUFA5Q16718 116 aa5.52□□□□□ -1.53
USP40-216ENST00000485943 SUMO4Q6EEV6 95 aa5.52□□□□□ -1.53
USP40-216ENST00000485943 TM2D2Q9BX73 214 aa5.52□□□□□ -1.53
USP40-216ENST00000485943 KMT2CQ8NEZ4 4911 aaKnown RBP5.52□□□□□ -1.53
USP40-216ENST00000485943 TRAV8-3A0A0A6YYJ7 113 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 IGHV1-24A0A0C4DH33 117 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 A0A1B0GW15 77 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 PPP1R17O96001 155 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 ANGP03950 147 aaKnown RBP5.51□□□□□ -1.53
USP40-216ENST00000485943 PMCHP20382 165 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 S100PP25815 95 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 CAMPP49913 170 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 LINC00315P59091 139 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 SMAGPQ0VAQ4 97 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 AMMECR1LQ6DCA0 310 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 UQCC3Q6UW78 93 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 COMMD7Q86VX2 200 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 KRTAP19-1Q8IUB9 90 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 NEXN-AS1Q8NBZ9 246 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 NIT2Q9NQR4 276 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 ALMS1Q8TCU4 4167 aa5.51□□□□□ -1.53
USP40-216ENST00000485943 PLECQ15149 4684 aaKnown RBP5.5□□□□□ -1.53
USP40-216ENST00000485943 APCSP02743 223 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 DNAH10OSP0CZ25 163 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 FCER1GP30273 86 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 AMTP48728 403 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 UBE2D3P61077 147 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 UBE2D2P62837 147 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 LINC01556Q5JQF7 62 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 MRPL54Q6P161 138 aaKnown RBP5.5□□□□□ -1.53
USP40-216ENST00000485943 BTF3L4Q96K17 158 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 LYSTQ99698 3801 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 ST20Q9HBF5 79 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 COX11Q9Y6N1 276 aa5.5□□□□□ -1.53
USP40-216ENST00000485943 IGKV2D-24A0A075B6R9 120 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 TRBV6-8A0A0A6YYG3 113 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 TNFRSF6BO95407 300 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 HBBP68871 147 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 Q0VG73 95 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 UFSP1Q6NVU6 142 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 RNASEKQ6P5S7 137 aaKnown RBP5.49□□□□□ -1.53
USP40-216ENST00000485943 Q6ZR54 194 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms