RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MYH9P35579 1960 aaKnown RBP1.03□□□□□ -2.25
UPF3B-203ENST00000478840 A0A1B0GV90 55 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 CLPSL1A2RUU4 121 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 F2Z2F3 143 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 APOC4-APOC2K7ER74 178 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 APOC2P02655 101 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 S100A7L2Q5SY68 101 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 SPATA8Q6RVD6 105 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 PPP3R2Q96LZ3 170 aa1.02□□□□□ -2.25
UPF3B-203ENST00000478840 FAM103A1Q9BTL3 118 aaKnown RBP1.02□□□□□ -2.25
UPF3B-203ENST00000478840 ABCA1O95477 2261 aa1.01□□□□□ -2.25
UPF3B-203ENST00000478840 LSM10Q969L4 123 aaKnown RBP1.01□□□□□ -2.25
UPF3B-203ENST00000478840 BPESC1Q9GZL8 116 aa1.01□□□□□ -2.25
UPF3B-203ENST00000478840 NALCNQ8IZF0 1738 aa1.01□□□□□ -2.25
UPF3B-203ENST00000478840 LOC100130705A0A1B0GUX0 176 aa1□□□□□ -2.25
UPF3B-203ENST00000478840 SIX6O95475 246 aa1□□□□□ -2.25
UPF3B-203ENST00000478840 TNFP01375 233 aa1□□□□□ -2.25
UPF3B-203ENST00000478840 EDDM3BP56851 147 aa1□□□□□ -2.25
UPF3B-203ENST00000478840 Q8N8P6 123 aa1□□□□□ -2.25
UPF3B-203ENST00000478840 RBBP6Q7Z6E9 1792 aaKnown RBP1□□□□□ -2.25
UPF3B-203ENST00000478840 MED13LQ71F56 2210 aa1□□□□□ -2.25
UPF3B-203ENST00000478840 NCOA3Q9Y6Q9 1424 aa0.99□□□□□ -2.25
UPF3B-203ENST00000478840 TNS1Q9HBL0 1735 aaKnown RBP0.99□□□□□ -2.25
UPF3B-203ENST00000478840 SPAARA0A1B0GVQ0 90 aa0.99□□□□□ -2.25
UPF3B-203ENST00000478840 IFNGP01579 166 aa0.99□□□□□ -2.25
UPF3B-203ENST00000478840 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.99□□□□□ -2.25
UPF3B-203ENST00000478840 C8orf59Q8N0T1 100 aaPredicted RBP0.99□□□□□ -2.25
UPF3B-203ENST00000478840 Q96NJ1 140 aa0.99□□□□□ -2.25
UPF3B-203ENST00000478840 SCN3BQ9NY72 215 aa0.99□□□□□ -2.25
UPF3B-203ENST00000478840 CDK13Q14004 1512 aaKnown RBP0.99□□□□□ -2.25
UPF3B-203ENST00000478840 KTN1Q86UP2 1357 aaKnown RBP0.98□□□□□ -2.25
UPF3B-203ENST00000478840 TRAV13-2A0A0B4J235 113 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 SMIM6P0DI80 62 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 SPINK7P58062 85 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 MRPS10P82664 201 aaKnown RBP0.98□□□□□ -2.25
UPF3B-203ENST00000478840 SMIM11BQ8TCY0 68 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 AQP10Q96PS8 301 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 PRR15LQ9BU68 103 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 LINC00312Q9Y6C7 94 aa0.98□□□□□ -2.25
UPF3B-203ENST00000478840 SIPA1L3O60292 1781 aaPredicted RBP0.98□□□□□ -2.25
UPF3B-203ENST00000478840 HCG22E2RYF7 251 aa0.97□□□□□ -2.25
UPF3B-203ENST00000478840 NWD2Q9ULI1 1742 aa0.97□□□□□ -2.25
UPF3B-203ENST00000478840 A2ML1A8K2U0 1454 aa0.97□□□□□ -2.25
UPF3B-203ENST00000478840 LRRC37A3O60309 1634 aa0.97□□□□□ -2.25
UPF3B-203ENST00000478840 ARFGEF1Q9Y6D6 1849 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 GVQW2A0A096LPI5 108 aaPredicted RBP0.96□□□□□ -2.26
UPF3B-203ENST00000478840 MIF4GDA9UHW6 222 aaKnown RBP0.96□□□□□ -2.26
UPF3B-203ENST00000478840 CORTO00230 105 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 GNG4P50150 75 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 TPPP2P59282 170 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 RBM3P98179 157 aaKnown RBP0.96□□□□□ -2.26
UPF3B-203ENST00000478840 WHAMMP3Q1A5X7 153 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 IER3IP1Q9Y5U9 82 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 PXDNQ92626 1479 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 QRICH2Q9H0J4 1663 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 CASKIN1Q8WXD9 1431 aa0.96□□□□□ -2.26
UPF3B-203ENST00000478840 EIF4G3O43432 1585 aaKnown RBP0.96□□□□□ -2.26
UPF3B-203ENST00000478840 LINC00587B1AMM8 73 aa0.95□□□□□ -2.26
UPF3B-203ENST00000478840 F6UZH7 168 aa0.95□□□□□ -2.26
UPF3B-203ENST00000478840 CATR1Q13166 79 aa0.95□□□□□ -2.26
UPF3B-203ENST00000478840 VMO1Q7Z5L0 202 aa0.95□□□□□ -2.26
UPF3B-203ENST00000478840 WFDC6Q9BQY6 131 aa0.95□□□□□ -2.26
UPF3B-203ENST00000478840 GNG8Q9UK08 70 aa0.95□□□□□ -2.26
UPF3B-203ENST00000478840 SSSCA1O60232 199 aa0.94□□□□□ -2.26
UPF3B-203ENST00000478840 ACYP2P14621 99 aa0.94□□□□□ -2.26
UPF3B-203ENST00000478840 INSL4Q14641 139 aa0.94□□□□□ -2.26
UPF3B-203ENST00000478840 Q5VV11 94 aa0.94□□□□□ -2.26
UPF3B-203ENST00000478840 MRPL54Q6P161 138 aaKnown RBP0.94□□□□□ -2.26
UPF3B-203ENST00000478840 CYP4F30PQ9H0H9 118 aa0.94□□□□□ -2.26
UPF3B-203ENST00000478840 TMEM14DPA8MWL7 114 aa0.93□□□□□ -2.26
UPF3B-203ENST00000478840 SNAPC5O75971 98 aa0.93□□□□□ -2.26
UPF3B-203ENST00000478840 C5orf38Q86SI9 138 aa0.93□□□□□ -2.26
UPF3B-203ENST00000478840 PLAC8Q9NZF1 115 aa0.93□□□□□ -2.26
UPF3B-203ENST00000478840 FAM135AQ9P2D6 1515 aa0.93□□□□□ -2.26
UPF3B-203ENST00000478840 SSC5DA1L4H1 1573 aa0.92□□□□□ -2.26
UPF3B-203ENST00000478840 MEGF8Q7Z7M0 2845 aa0.92□□□□□ -2.26
UPF3B-203ENST00000478840 TRGV1A0A0A0MS02 117 aa0.92□□□□□ -2.26
UPF3B-203ENST00000478840 C10orf128Q5T292 105 aa0.92□□□□□ -2.26
UPF3B-203ENST00000478840 BAGE3Q86Y29 109 aa0.92□□□□□ -2.26
UPF3B-203ENST00000478840 JMJD1CQ15652 2540 aa0.91□□□□□ -2.26
UPF3B-203ENST00000478840 PPIP5K1Q6PFW1 1433 aa0.91□□□□□ -2.26
UPF3B-203ENST00000478840 KCPQ6ZWJ8 1503 aa0.91□□□□□ -2.26
UPF3B-203ENST00000478840 F5P12259 2224 aa0.91□□□□□ -2.26
UPF3B-203ENST00000478840 R4GMQ9 66 aa0.91□□□□□ -2.26
UPF3B-203ENST00000478840 MYOM2P54296 1465 aa0.91□□□□□ -2.26
UPF3B-203ENST00000478840 CPSF1Q10570 1443 aaKnown RBP0.9□□□□□ -2.26
UPF3B-203ENST00000478840 PATJQ8NI35 1801 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 PPP3R1P63098 170 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 C9orf153Q5TBE3 101 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 Q6ZRX8 168 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 COMMD6Q7Z4G1 85 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 TTC9CQ8N5M4 171 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 PROK2Q9HC23 129 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 LENEPQ9Y5L5 61 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 PEG3Q9GZU2 1588 aa0.9□□□□□ -2.27
UPF3B-203ENST00000478840 CUL7Q14999 1698 aa0.89□□□□□ -2.27
UPF3B-203ENST00000478840 LAMC3Q9Y6N6 1575 aa0.89□□□□□ -2.27
UPF3B-203ENST00000478840 PPP1R17O96001 155 aa0.89□□□□□ -2.27
UPF3B-203ENST00000478840 FRAS1Q86XX4 4008 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms