RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 MRPL54Q6P161 138 aaKnown RBP7.55□□□□□ -1.2
SEMA4D-216ENST00000474258 TMEM136Q6ZRR5 245 aa7.55□□□□□ -1.2
SEMA4D-216ENST00000474258 NFE4Q86UQ8 179 aa7.55□□□□□ -1.2
SEMA4D-216ENST00000474258 ZNF479Q96JC4 524 aa7.55□□□□□ -1.2
SEMA4D-216ENST00000474258 PGPEP1Q9NXJ5 209 aa7.55□□□□□ -1.2
SEMA4D-216ENST00000474258 NAGKQ9UJ70 344 aa7.55□□□□□ -1.2
SEMA4D-216ENST00000474258 ABCA13Q86UQ4 5058 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 IGHV3-16A0A0C4DH30 117 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 MT-ND6P03923 174 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 TRGC2P03986 189 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 S100A8P05109 93 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 RNASE3P12724 160 aaKnown RBP7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 HBBP68871 147 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 BORCS7Q96B45 105 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 TRAPPC1Q9Y5R8 145 aa7.54□□□□□ -1.2
SEMA4D-216ENST00000474258 TRAV4A0A0B4J268 109 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 C1orf196B1AJZ1 125 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 K7EP13 123 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 GYPEP15421 78 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 NTF3P20783 257 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 C9orf85Q96MD7 179 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 TNFRSF18Q9Y5U5 241 aa7.53□□□□□ -1.2
SEMA4D-216ENST00000474258 M0R2P5 195 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 HLA-DQA1P01909 254 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 EVI2AP22794 236 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 S100A4P26447 101 aaKnown RBP7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 CAMPP49913 170 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 FABP9Q0Z7S8 132 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 CDPF1Q6NVV7 123 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 OR4C5Q8NGB2 326 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 PTH2Q96A98 100 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 TPPP3Q9BW30 176 aa7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 APOBP04114 4563 aaKnown RBP7.52□□□□□ -1.21
SEMA4D-216ENST00000474258 H3BVH4 76 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 TWIST1Q15672 202 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 DMRTA1Q5VZB9 504 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 SH2D6Q7Z4S9 175 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 WFDC10BQ8IUB3 73 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 OR10AG1Q8NH19 301 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 FRZBQ92765 325 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 TMEM191AQ9H0A3 160 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 MRPL18Q9H0U6 180 aaKnown RBP7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 MSRB1Q9NZV6 116 aa7.51□□□□□ -1.21
SEMA4D-216ENST00000474258 DNAH5Q8TE73 4624 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 MUC21A0A0G2JKD1 596 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 MUC21A0A140T8X8 626 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 APCSP02743 223 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 DNAH10OSP0CZ25 163 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 RAB4BP61018 213 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 RAB5BP61020 215 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 PIK3CD-AS1Q5SR53 167 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 C10orf126Q8N4M7 172 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 PHLDA3Q9Y5J5 127 aa7.5□□□□□ -1.21
SEMA4D-216ENST00000474258 A0A087WTM6 91 aa7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 CRYGDP07320 174 aa7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 TRGC1P0CF51 173 aa7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 FUSP35637 526 aaKnown RBP eCLIP7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 SPANXN1Q5VSR9 72 aa7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 FAM104BQ5XKR9 115 aa7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 ZFP82Q8N141 532 aa7.49□□□□□ -1.21
SEMA4D-216ENST00000474258 LOC100131303A0A0U1RQF7 123 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 EPM2AB3EWF7 344 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 CIDEAO60543 219 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BKO60814 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BJP06899 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 GATA1P15976 413 aaPredicted RBP7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BOP23527 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BBP33778 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 TIRAPP58753 221 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BDP58876 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BCP62807 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST2H2BEQ16778 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BHQ93079 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BNQ99877 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 HIST1H2BMQ99879 126 aa7.48□□□□□ -1.21
SEMA4D-216ENST00000474258 RAB4AP20338 218 aa7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 SSTP61278 116 aa7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 ZNF876PQ49A33 203 aa7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 COA6Q5JTJ3 125 aaKnown RBP7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 SYT8Q8NBV8 401 aa7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 RNF185Q96GF1 192 aa7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 ALKBH7Q9BT30 221 aaPredicted RBP7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 TMA7Q9Y2S6 64 aaKnown RBP7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 KIF25-AS1Q9Y6Z4 181 aa7.47□□□□□ -1.21
SEMA4D-216ENST00000474258 TRAV8-6A0A0B4J262 113 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 IGHV3-38A0A0C4DH36 116 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 M0R381 172 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 Q0VG73 95 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 KIAA1644Q3SXP7 199 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 SMIM15Q7Z3B0 74 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 AMN1Q8IY45 258 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 SLC25A29Q8N8R3 303 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 PRADC1Q9BSG0 188 aa7.46□□□□□ -1.22
SEMA4D-216ENST00000474258 TRBV6-4A0A1B0GX49 114 aa7.45□□□□□ -1.22
SEMA4D-216ENST00000474258 RS1O15537 224 aa7.45□□□□□ -1.22
SEMA4D-216ENST00000474258 PPBPP02775 128 aa7.45□□□□□ -1.22
SEMA4D-216ENST00000474258 XGP55808 180 aa7.45□□□□□ -1.22
SEMA4D-216ENST00000474258 KRTAP10-1P60331 282 aa7.45□□□□□ -1.22
SEMA4D-216ENST00000474258 MRPL51Q4U2R6 128 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms