RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 IGHV3-30-3P0DP02 117 aa12.41□□□□□ -0.42
HOXD3-204ENST00000459979 IGHV3-30-5P0DP03 117 aa12.41□□□□□ -0.42
HOXD3-204ENST00000459979 SSTP61278 116 aa12.41□□□□□ -0.42
HOXD3-204ENST00000459979 LYZL1Q6UWQ5 148 aa12.41□□□□□ -0.42
HOXD3-204ENST00000459979 A0A087WTM6 91 aa12.4□□□□□ -0.42
HOXD3-204ENST00000459979 EREGO14944 169 aa12.4□□□□□ -0.42
HOXD3-204ENST00000459979 TEX261Q6UWH6 196 aa12.4□□□□□ -0.42
HOXD3-204ENST00000459979 SRP19P09132 144 aaKnown RBP12.39□□□□□ -0.43
HOXD3-204ENST00000459979 TRGC1P0CF51 173 aa12.39□□□□□ -0.43
HOXD3-204ENST00000459979 NTF3P20783 257 aa12.39□□□□□ -0.43
HOXD3-204ENST00000459979 NIT1Q86X76 327 aa12.39□□□□□ -0.43
HOXD3-204ENST00000459979 CHCHD7Q9BUK0 85 aa12.39□□□□□ -0.43
HOXD3-204ENST00000459979 PGPEP1Q9NXJ5 209 aa12.39□□□□□ -0.43
HOXD3-204ENST00000459979 M0QY20 66 aa12.38□□□□□ -0.43
HOXD3-204ENST00000459979 Q8N3U1 123 aa12.38□□□□□ -0.43
HOXD3-204ENST00000459979 SMIM7Q9BQ49 75 aa12.38□□□□□ -0.43
HOXD3-204ENST00000459979 TRBV6-8A0A0A6YYG3 113 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 EPM2AB3EWF7 344 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 H7C1H1 209 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 CT83Q5H943 113 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 CDPF1Q6NVV7 123 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 DAZ4Q86SG3 579 aaKnown RBP12.37□□□□□ -0.43
HOXD3-204ENST00000459979 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.37□□□□□ -0.43
HOXD3-204ENST00000459979 GTSF1Q8WW33 167 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 DNAJC30Q96LL9 226 aa12.37□□□□□ -0.43
HOXD3-204ENST00000459979 DAZ3Q9NR90 486 aaKnown RBP12.37□□□□□ -0.43
HOXD3-204ENST00000459979 TRAV8-3A0A0A6YYJ7 113 aa12.36□□□□□ -0.43
HOXD3-204ENST00000459979 GATCO43716 136 aaKnown RBP12.36□□□□□ -0.43
HOXD3-204ENST00000459979 CEBPGP53567 150 aa12.36□□□□□ -0.43
HOXD3-204ENST00000459979 FOXA3P55318 350 aaPredicted RBP12.36□□□□□ -0.43
HOXD3-204ENST00000459979 TMEM97Q5BJF2 176 aa12.36□□□□□ -0.43
HOXD3-204ENST00000459979 LINC01551Q86U37 167 aa12.36□□□□□ -0.43
HOXD3-204ENST00000459979 DPH3P1Q9H4G8 78 aa12.36□□□□□ -0.43
HOXD3-204ENST00000459979 LRCOL1A6NCL2 159 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 ZNF727A8MUV8 499 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 A8MWL6 223 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 SUMO4Q6EEV6 95 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 TM2D2Q9BX73 214 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 Q9HAA7 133 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 URGCP-MRPS24S4R325 110 aa12.35□□□□□ -0.43
HOXD3-204ENST00000459979 PSCAO43653 123 aa12.34□□□□□ -0.43
HOXD3-204ENST00000459979 MGPP08493 103 aa12.34□□□□□ -0.43
HOXD3-204ENST00000459979 FAM74A3Q4VXF1 159 aa12.34□□□□□ -0.43
HOXD3-204ENST00000459979 SMDT1Q9H4I9 107 aa12.34□□□□□ -0.43
HOXD3-204ENST00000459979 A0A087WX48 190 aa12.33□□□□□ -0.44
HOXD3-204ENST00000459979 ELOBQ15370 118 aa12.33□□□□□ -0.44
HOXD3-204ENST00000459979 TWIST1Q15672 202 aa12.33□□□□□ -0.44
HOXD3-204ENST00000459979 RASL11AQ6T310 242 aa12.33□□□□□ -0.44
HOXD3-204ENST00000459979 OSTCQ9NRP0 149 aa12.33□□□□□ -0.44
HOXD3-204ENST00000459979 FAM231BA6NCW3 169 aa12.32□□□□□ -0.44
HOXD3-204ENST00000459979 XGP55808 180 aa12.32□□□□□ -0.44
HOXD3-204ENST00000459979 NTM-AS1Q6ZSK4 140 aa12.32□□□□□ -0.44
HOXD3-204ENST00000459979 FRZBQ92765 325 aa12.32□□□□□ -0.44
HOXD3-204ENST00000459979 INAFM2P0DMQ5 153 aa12.31□□□□□ -0.44
HOXD3-204ENST00000459979 PKIAP61925 76 aa12.31□□□□□ -0.44
HOXD3-204ENST00000459979 KCNIP4Q6PIL6 250 aa12.31□□□□□ -0.44
HOXD3-204ENST00000459979 GFRA4Q9GZZ7 299 aa12.31□□□□□ -0.44
HOXD3-204ENST00000459979 NIT2Q9NQR4 276 aa12.31□□□□□ -0.44
HOXD3-204ENST00000459979 COX11Q9Y6N1 276 aa12.31□□□□□ -0.44
HOXD3-204ENST00000459979 HERC1Q15751 4861 aa12.3□□□□□ -0.44
HOXD3-204ENST00000459979 C9JQL5 133 aa12.3□□□□□ -0.44
HOXD3-204ENST00000459979 PEA15Q15121 130 aa12.3□□□□□ -0.44
HOXD3-204ENST00000459979 TMEM241Q24JQ0 296 aa12.3□□□□□ -0.44
HOXD3-204ENST00000459979 TSKUQ8WUA8 353 aa12.3□□□□□ -0.44
HOXD3-204ENST00000459979 KLK12Q9UKR0 248 aa12.3□□□□□ -0.44
HOXD3-204ENST00000459979 KRTAP10-1P60331 282 aa12.29□□□□□ -0.44
HOXD3-204ENST00000459979 IQCJQ1A5X6 159 aa12.29□□□□□ -0.44
HOXD3-204ENST00000459979 ATRAIDQ6UW56 229 aa12.29□□□□□ -0.44
HOXD3-204ENST00000459979 RMI2Q96E14 147 aa12.29□□□□□ -0.44
HOXD3-204ENST00000459979 TMEM262E9PQX1 116 aa12.28□□□□□ -0.44
HOXD3-204ENST00000459979 Q5VSD8 79 aa12.28□□□□□ -0.44
HOXD3-204ENST00000459979 SMIM15Q7Z3B0 74 aa12.28□□□□□ -0.44
HOXD3-204ENST00000459979 NTN5Q8WTR8 489 aaPredicted RBP12.28□□□□□ -0.44
HOXD3-204ENST00000459979 PGLYRP4Q96LB8 373 aa12.28□□□□□ -0.44
HOXD3-204ENST00000459979 CHCHD5Q9BSY4 110 aa12.28□□□□□ -0.44
HOXD3-204ENST00000459979 TRBV25-1A0A075B6N4 114 aa12.27□□□□□ -0.45
HOXD3-204ENST00000459979 RPL23P62829 140 aaKnown RBP12.27□□□□□ -0.45
HOXD3-204ENST00000459979 SRSF3P84103 164 aaKnown RBP12.27□□□□□ -0.45
HOXD3-204ENST00000459979 Q0VG73 95 aa12.27□□□□□ -0.45
HOXD3-204ENST00000459979 MPV17L2Q567V2 206 aa12.27□□□□□ -0.45
HOXD3-204ENST00000459979 Q8N814 137 aa12.27□□□□□ -0.45
HOXD3-204ENST00000459979 GATD1Q8NB37 220 aa12.27□□□□□ -0.45
HOXD3-204ENST00000459979 ISOC2Q96AB3 205 aa12.27□□□□□ -0.45
HOXD3-204ENST00000459979 IGHV1-24A0A0C4DH33 117 aa12.26□□□□□ -0.45
HOXD3-204ENST00000459979 HIGD1CA8MV81 97 aa12.26□□□□□ -0.45
HOXD3-204ENST00000459979 C15orf54Q8N8G6 183 aa12.26□□□□□ -0.45
HOXD3-204ENST00000459979 UBE2WQ96B02 151 aa12.26□□□□□ -0.45
HOXD3-204ENST00000459979 NAT8Q9UHE5 227 aa12.26□□□□□ -0.45
HOXD3-204ENST00000459979 V9GYV3 84 aa12.26□□□□□ -0.45
HOXD3-204ENST00000459979 A0A1B0GUT8 65 aa12.25□□□□□ -0.45
HOXD3-204ENST00000459979 HAMPP81172 84 aa12.25□□□□□ -0.45
HOXD3-204ENST00000459979 BORCS7Q96B45 105 aa12.25□□□□□ -0.45
HOXD3-204ENST00000459979 SMR3BP02814 79 aaPredicted RBP12.24□□□□□ -0.45
HOXD3-204ENST00000459979 FAT1Q14517 4588 aa12.24□□□□□ -0.45
HOXD3-204ENST00000459979 ENHOQ6UWT2 76 aa12.24□□□□□ -0.45
HOXD3-204ENST00000459979 RBX1P62877 108 aa12.23□□□□□ -0.45
HOXD3-204ENST00000459979 TMEM191AQ9H0A3 160 aa12.23□□□□□ -0.45
HOXD3-204ENST00000459979 DMBT1Q9UGM3 2413 aaPredicted RBP12.22□□□□□ -0.45
HOXD3-204ENST00000459979 IGKV2D-24A0A075B6R9 120 aa12.22□□□□□ -0.45
HOXD3-204ENST00000459979 TRAV26-2A0A0B4J265 109 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms