RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TMEM262E9PQX1 116 aa12.56□□□□□ -0.4
USP39-209ENST00000458268 CTRLP40313 264 aa12.56□□□□□ -0.4
USP39-209ENST00000458268 OR10G8Q8NGN5 311 aa12.56□□□□□ -0.4
USP39-209ENST00000458268 PGLYRP4Q96LB8 373 aa12.56□□□□□ -0.4
USP39-209ENST00000458268 DPH3P1Q9H4G8 78 aa12.56□□□□□ -0.4
USP39-209ENST00000458268 PKHD1P08F94 4074 aa12.56□□□□□ -0.4
USP39-209ENST00000458268 A0A087WTM6 91 aa12.55□□□□□ -0.4
USP39-209ENST00000458268 H7C1H1 209 aa12.55□□□□□ -0.4
USP39-209ENST00000458268 NIT1Q86X76 327 aa12.55□□□□□ -0.4
USP39-209ENST00000458268 CHCHD5Q9BSY4 110 aa12.55□□□□□ -0.4
USP39-209ENST00000458268 LINC01551Q86U37 167 aa12.54□□□□□ -0.4
USP39-209ENST00000458268 DEFB104AQ8WTQ1 72 aa12.54□□□□□ -0.4
USP39-209ENST00000458268 GTSF1Q8WW33 167 aa12.54□□□□□ -0.4
USP39-209ENST00000458268 KLK12Q9UKR0 248 aa12.54□□□□□ -0.4
USP39-209ENST00000458268 TRBV6-8A0A0A6YYG3 113 aa12.53□□□□□ -0.4
USP39-209ENST00000458268 A8MWL6 223 aa12.53□□□□□ -0.4
USP39-209ENST00000458268 FAM231DQ6ZW35 169 aa12.53□□□□□ -0.4
USP39-209ENST00000458268 SMIM15Q7Z3B0 74 aa12.53□□□□□ -0.4
USP39-209ENST00000458268 BORCS7Q96B45 105 aa12.53□□□□□ -0.4
USP39-209ENST00000458268 M0QY20 66 aa12.52□□□□□ -0.41
USP39-209ENST00000458268 SRSF3P84103 164 aaKnown RBP12.52□□□□□ -0.41
USP39-209ENST00000458268 ADIRFQ15847 76 aa12.52□□□□□ -0.41
USP39-209ENST00000458268 UBE2WQ96B02 151 aa12.52□□□□□ -0.41
USP39-209ENST00000458268 TRAV26-2A0A0B4J265 109 aa12.51□□□□□ -0.41
USP39-209ENST00000458268 PEA15Q15121 130 aa12.51□□□□□ -0.41
USP39-209ENST00000458268 RASL11AQ6T310 242 aa12.51□□□□□ -0.41
USP39-209ENST00000458268 TRAV8-3A0A0A6YYJ7 113 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 C9JQL5 133 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 FOXA3P55318 350 aaPredicted RBP12.5□□□□□ -0.41
USP39-209ENST00000458268 GAGE6Q13070 117 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 LAGE3Q14657 143 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 TMEM241Q24JQ0 296 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 WDR73Q6P4I2 378 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 C15orf54Q8N8G6 183 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 DNAJC30Q96LL9 226 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 TM2D2Q9BX73 214 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 DNAH11Q96DT5 4516 aa12.5□□□□□ -0.41
USP39-209ENST00000458268 IGKV2D-24A0A075B6R9 120 aa12.49□□□□□ -0.41
USP39-209ENST00000458268 LECT2O14960 151 aa12.49□□□□□ -0.41
USP39-209ENST00000458268 TRBV25-1A0A075B6N4 114 aa12.48□□□□□ -0.41
USP39-209ENST00000458268 ANGP03950 147 aaKnown RBP12.48□□□□□ -0.41
USP39-209ENST00000458268 MPV17L2Q567V2 206 aa12.48□□□□□ -0.41
USP39-209ENST00000458268 NTM-AS1Q6ZSK4 140 aa12.48□□□□□ -0.41
USP39-209ENST00000458268 OSTCQ9NRP0 149 aa12.48□□□□□ -0.41
USP39-209ENST00000458268 KIAA1109Q2LD37 5005 aa12.48□□□□□ -0.41
USP39-209ENST00000458268 DYNC1H1Q14204 4646 aaKnown RBP12.47□□□□□ -0.41
USP39-209ENST00000458268 HIGD1CA8MV81 97 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 NDUFS6O75380 124 aaKnown RBP12.47□□□□□ -0.41
USP39-209ENST00000458268 CRPP02741 224 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 RPL23P62829 140 aaKnown RBP12.47□□□□□ -0.41
USP39-209ENST00000458268 ELOBQ15370 118 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 FAM74A3Q4VXF1 159 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 TMEM97Q5BJF2 176 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 CT83Q5H943 113 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 CLPSL2Q6UWE3 100 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 Q8N976 141 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 TSKUQ8WUA8 353 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 ISOC2Q96AB3 205 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 CNFNQ9BYD5 112 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 NIT2Q9NQR4 276 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 NAT8Q9UHE5 227 aa12.47□□□□□ -0.41
USP39-209ENST00000458268 IGHV1-24A0A0C4DH33 117 aa12.46□□□□□ -0.41
USP39-209ENST00000458268 RMI2Q96E14 147 aa12.46□□□□□ -0.41
USP39-209ENST00000458268 RPL39LQ96EH5 51 aaKnown RBP12.46□□□□□ -0.41
USP39-209ENST00000458268 PGPEP1Q9NXJ5 209 aa12.46□□□□□ -0.41
USP39-209ENST00000458268 RAB14P61106 215 aa12.45□□□□□ -0.42
USP39-209ENST00000458268 ATRAIDQ6UW56 229 aa12.45□□□□□ -0.42
USP39-209ENST00000458268 GATD1Q8NB37 220 aa12.45□□□□□ -0.42
USP39-209ENST00000458268 CHCHD7Q9BUK0 85 aa12.45□□□□□ -0.42
USP39-209ENST00000458268 IGLV5-52A0A0A0MRZ9 124 aa12.44□□□□□ -0.42
USP39-209ENST00000458268 A0A1B0GUT8 65 aa12.44□□□□□ -0.42
USP39-209ENST00000458268 LRCOL1A6NCL2 159 aa12.44□□□□□ -0.42
USP39-209ENST00000458268 BAALCQ8WXS3 180 aa12.44□□□□□ -0.42
USP39-209ENST00000458268 V9GYV3 84 aa12.44□□□□□ -0.42
USP39-209ENST00000458268 PKIAP61925 76 aa12.43□□□□□ -0.42
USP39-209ENST00000458268 WFDC2Q14508 124 aa12.43□□□□□ -0.42
USP39-209ENST00000458268 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.42□□□□□ -0.42
USP39-209ENST00000458268 AMTP48728 403 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 RBX1P62877 108 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 COTL1Q14019 142 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 CDPF1Q6NVV7 123 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 Q8N814 137 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 TMEM243Q9BU79 118 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 GFRA4Q9GZZ7 299 aa12.42□□□□□ -0.42
USP39-209ENST00000458268 UBE2L6O14933 153 aa12.41□□□□□ -0.42
USP39-209ENST00000458268 IQCJQ1A5X6 159 aa12.41□□□□□ -0.42
USP39-209ENST00000458268 C1orf43Q9BWL3 253 aa12.41□□□□□ -0.42
USP39-209ENST00000458268 COX11Q9Y6N1 276 aa12.41□□□□□ -0.42
USP39-209ENST00000458268 HERC2O95714 4834 aa12.41□□□□□ -0.42
USP39-209ENST00000458268 Q0VG73 95 aa12.4□□□□□ -0.42
USP39-209ENST00000458268 RIGQ13278 110 aa12.4□□□□□ -0.42
USP39-209ENST00000458268 MAPKAPK5-AS1Q8N8E1 139 aa12.4□□□□□ -0.42
USP39-209ENST00000458268 NUP35Q8NFH5 326 aa12.4□□□□□ -0.42
USP39-209ENST00000458268 SMDT1Q9H4I9 107 aa12.4□□□□□ -0.42
USP39-209ENST00000458268 CDK2AP2O75956 126 aa12.39□□□□□ -0.43
USP39-209ENST00000458268 HLA-DQA1P01909 254 aa12.39□□□□□ -0.43
USP39-209ENST00000458268 GCSHP23434 173 aa12.39□□□□□ -0.43
USP39-209ENST00000458268 KRTAP10-1P60331 282 aa12.39□□□□□ -0.43
USP39-209ENST00000458268 ENHOQ6UWT2 76 aa12.39□□□□□ -0.43
USP39-209ENST00000458268 LINC00269Q8N2A0 174 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms