RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SMIM15Q7Z3B0 74 aa6.14□□□□□ -1.43
SYNE1-214ENST00000454018 IMMP2LQ96T52 175 aa6.14□□□□□ -1.43
SYNE1-214ENST00000454018 DPH3P1Q9H4G8 78 aa6.14□□□□□ -1.43
SYNE1-214ENST00000454018 MSRB1Q9NZV6 116 aa6.14□□□□□ -1.43
SYNE1-214ENST00000454018 IGHV3-73A0A0B4J1V6 119 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 TRBV6-4A0A1B0GX49 114 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 C5orf52A6NGY3 159 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 PAX4O43316 350 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 S100A8P05109 93 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 CRYBA4P53673 196 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 RHOHQ15669 191 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 ZNF56Q15929 161 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 KCNIP4Q6PIL6 250 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 ATP5L2Q7Z4Y8 100 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 C14orf178Q8N769 122 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-214ENST00000454018 SAMD10Q9BYL1 202 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 HHLA3Q9XRX5 114 aa6.13□□□□□ -1.43
SYNE1-214ENST00000454018 TRAV9-1A0A075B6T8 112 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 K7EQD1 137 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 EVI2AP22794 236 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 RAB4BP61018 213 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 LINC00476Q8WZB0 136 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 VSIG2Q96IQ7 327 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 PRADC1Q9BSG0 188 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 KRTAP4-8Q9BYQ9 185 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 RPS10P5Q9NQ39 176 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 KIF25-AS1Q9Y6Z4 181 aa6.12□□□□□ -1.43
SYNE1-214ENST00000454018 A0A0J9YY99 117 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 H7C1H1 209 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 MGPP08493 103 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 S100PP25815 95 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 HBBP68871 147 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 FOXI1Q12951 378 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 SLC25A29Q8N8R3 303 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 BTF3L4Q96K17 158 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 TMEM191AQ9H0A3 160 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 ICOSQ9Y6W8 199 aa6.11□□□□□ -1.43
SYNE1-214ENST00000454018 TRBV10-1A0A0K0K1A3 114 aa6.1□□□□□ -1.43
SYNE1-214ENST00000454018 A0A1B0GXF2 115 aa6.1□□□□□ -1.43
SYNE1-214ENST00000454018 LINC00315P59091 139 aa6.1□□□□□ -1.43
SYNE1-214ENST00000454018 MRPL54Q6P161 138 aaKnown RBP6.1□□□□□ -1.43
SYNE1-214ENST00000454018 FRZBQ92765 325 aa6.1□□□□□ -1.43
SYNE1-214ENST00000454018 APLNQ9ULZ1 77 aa6.1□□□□□ -1.43
SYNE1-214ENST00000454018 STARD9Q9P2P6 4700 aa6.1□□□□□ -1.43
SYNE1-214ENST00000454018 NUDT3O95989 172 aa6.09□□□□□ -1.43
SYNE1-214ENST00000454018 SRIP30626 198 aa6.09□□□□□ -1.43
SYNE1-214ENST00000454018 MRPL23Q16540 153 aaKnown RBP6.09□□□□□ -1.43
SYNE1-214ENST00000454018 LBHQ53QV2 105 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-214ENST00000454018 RASL11AQ6T310 242 aa6.09□□□□□ -1.43
SYNE1-214ENST00000454018 SH2D6Q7Z4S9 175 aa6.09□□□□□ -1.43
SYNE1-214ENST00000454018 GATD1Q8NB37 220 aa6.09□□□□□ -1.43
SYNE1-214ENST00000454018 TMEM18Q96B42 140 aa6.09□□□□□ -1.43
SYNE1-214ENST00000454018 A0A096LPF7 62 aa6.09□□□□□ -1.44
SYNE1-214ENST00000454018 SUMO4Q6EEV6 95 aa6.09□□□□□ -1.44
SYNE1-214ENST00000454018 URGCP-MRPS24S4R325 110 aa6.09□□□□□ -1.44
SYNE1-214ENST00000454018 DYNC2H1Q8NCM8 4307 aaKnown RBP6.08□□□□□ -1.44
SYNE1-214ENST00000454018 M0QY20 66 aa6.08□□□□□ -1.44
SYNE1-214ENST00000454018 LINC00694P0DN24 101 aa6.08□□□□□ -1.44
SYNE1-214ENST00000454018 RPL36AP83881 106 aaKnown RBP6.08□□□□□ -1.44
SYNE1-214ENST00000454018 NEGR1Q7Z3B1 354 aa6.08□□□□□ -1.44
SYNE1-214ENST00000454018 AMN1Q8IY45 258 aa6.08□□□□□ -1.44
SYNE1-214ENST00000454018 RPL36ALQ969Q0 106 aaKnown RBP6.08□□□□□ -1.44
SYNE1-214ENST00000454018 MRAP2Q96G30 205 aa6.08□□□□□ -1.44
SYNE1-214ENST00000454018 TRBV7-3A0A075B6L6 115 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 LOC100131303A0A0U1RQF7 123 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 P0DMU3 169 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 FAM231AP0DMU4 169 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 FAM231CP0DMU5 169 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 COX19Q49B96 90 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 FAM104BQ5XKR9 115 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 NEXN-AS1Q8NBZ9 246 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 DNAJC30Q96LL9 226 aa6.07□□□□□ -1.44
SYNE1-214ENST00000454018 TRAV26-2A0A0B4J265 109 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 GAGE12JA6NER3 117 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.06□□□□□ -1.44
SYNE1-214ENST00000454018 HLA-DQA1P01909 254 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 RAB4AP20338 218 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 CCL18P55774 89 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 GAGE1Q13065 139 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 GAGE4Q13068 117 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 GAGE5Q13069 117 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 UBE2V1Q13404 147 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 ATRAIDQ6UW56 229 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.06□□□□□ -1.44
SYNE1-214ENST00000454018 RNF185Q96GF1 192 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 NIT2Q9NQR4 276 aa6.06□□□□□ -1.44
SYNE1-214ENST00000454018 TRBV24-1A0A075B6N3 115 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 PPP1R17O96001 155 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 MT-ND6P03923 174 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 UBE2D3P61077 147 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 UBE2D2P62837 147 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 ELOBQ15370 118 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 LGALS9CQ6DKI2 356 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 UBE2DNLQ8IWF7 75 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 ATP6V0E2Q8NHE4 81 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 ZNRF2Q8NHG8 242 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 SMCO4Q9NRQ5 59 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 TNFRSF18Q9Y5U5 241 aa6.05□□□□□ -1.44
SYNE1-214ENST00000454018 ATP6V1G1O75348 118 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 PPBPP02775 128 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms