RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 PGPEP1Q9NXJ5 209 aa16.61■□□□□ 0.25
RAPGEF1-206ENST00000438647 DNAH5Q8TE73 4624 aa16.61■□□□□ 0.25
RAPGEF1-206ENST00000438647 NTF3P20783 257 aa16.6■□□□□ 0.25
RAPGEF1-206ENST00000438647 KCNIP4Q6PIL6 250 aa16.6■□□□□ 0.25
RAPGEF1-206ENST00000438647 FAM231DQ6ZW35 169 aa16.6■□□□□ 0.25
RAPGEF1-206ENST00000438647 NIT1Q86X76 327 aa16.6■□□□□ 0.25
RAPGEF1-206ENST00000438647 CHCHD7Q9BUK0 85 aa16.6■□□□□ 0.25
RAPGEF1-206ENST00000438647 TRAV8-3A0A0A6YYJ7 113 aa16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 GATCO43716 136 aaKnown RBP16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 TMEM97Q5BJF2 176 aa16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 CDPF1Q6NVV7 123 aa16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 DAZ4Q86SG3 579 aaKnown RBP16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 Q8N3U1 123 aa16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 TM2D2Q9BX73 214 aa16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 CNFNQ9BYD5 112 aa16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 DAZ3Q9NR90 486 aaKnown RBP16.59■□□□□ 0.25
RAPGEF1-206ENST00000438647 A0A087WX48 190 aa16.58■□□□□ 0.24
RAPGEF1-206ENST00000438647 TRBV6-8A0A0A6YYG3 113 aa16.58■□□□□ 0.24
RAPGEF1-206ENST00000438647 TEX261Q6UWH6 196 aa16.58■□□□□ 0.24
RAPGEF1-206ENST00000438647 DPH3P1Q9H4G8 78 aa16.58■□□□□ 0.24
RAPGEF1-206ENST00000438647 ZNF727A8MUV8 499 aa16.57■□□□□ 0.24
RAPGEF1-206ENST00000438647 TWIST1Q15672 202 aa16.57■□□□□ 0.24
RAPGEF1-206ENST00000438647 DNAJC30Q96LL9 226 aa16.57■□□□□ 0.24
RAPGEF1-206ENST00000438647 RYR1P21817 5038 aa16.56■□□□□ 0.24
RAPGEF1-206ENST00000438647 A8MWL6 223 aa16.56■□□□□ 0.24
RAPGEF1-206ENST00000438647 M0QY20 66 aa16.56■□□□□ 0.24
RAPGEF1-206ENST00000438647 SRP19P09132 144 aaKnown RBP16.56■□□□□ 0.24
RAPGEF1-206ENST00000438647 ELOBQ15370 118 aa16.56■□□□□ 0.24
RAPGEF1-206ENST00000438647 CDK2AP2O75956 126 aa16.55■□□□□ 0.24
RAPGEF1-206ENST00000438647 PKIAP61925 76 aa16.55■□□□□ 0.24
RAPGEF1-206ENST00000438647 CT83Q5H943 113 aa16.55■□□□□ 0.24
RAPGEF1-206ENST00000438647 SUMO4Q6EEV6 95 aa16.55■□□□□ 0.24
RAPGEF1-206ENST00000438647 LINC01551Q86U37 167 aa16.54■□□□□ 0.24
RAPGEF1-206ENST00000438647 GTSF1Q8WW33 167 aa16.54■□□□□ 0.24
RAPGEF1-206ENST00000438647 TMEM262E9PQX1 116 aa16.53■□□□□ 0.24
RAPGEF1-206ENST00000438647 SMIM15Q7Z3B0 74 aa16.53■□□□□ 0.24
RAPGEF1-206ENST00000438647 COX11Q9Y6N1 276 aa16.53■□□□□ 0.24
RAPGEF1-206ENST00000438647 FAM74A3Q4VXF1 159 aa16.52■□□□□ 0.24
RAPGEF1-206ENST00000438647 RASL11AQ6T310 242 aa16.52■□□□□ 0.24
RAPGEF1-206ENST00000438647 RMI2Q96E14 147 aa16.52■□□□□ 0.24
RAPGEF1-206ENST00000438647 HSPG2P98160 4391 aa16.51■□□□□ 0.23
RAPGEF1-206ENST00000438647 LRCOL1A6NCL2 159 aa16.51■□□□□ 0.23
RAPGEF1-206ENST00000438647 CHCHD5Q9BSY4 110 aa16.51■□□□□ 0.23
RAPGEF1-206ENST00000438647 KLK12Q9UKR0 248 aa16.51■□□□□ 0.23
RAPGEF1-206ENST00000438647 TRBV25-1A0A075B6N4 114 aa16.5■□□□□ 0.23
RAPGEF1-206ENST00000438647 BORCS7Q96B45 105 aa16.5■□□□□ 0.23
RAPGEF1-206ENST00000438647 FOXA3P55318 350 aaPredicted RBP16.49■□□□□ 0.23
RAPGEF1-206ENST00000438647 PEA15Q15121 130 aa16.49■□□□□ 0.23
RAPGEF1-206ENST00000438647 SMDT1Q9H4I9 107 aa16.49■□□□□ 0.23
RAPGEF1-206ENST00000438647 NIT2Q9NQR4 276 aa16.49■□□□□ 0.23
RAPGEF1-206ENST00000438647 OSTCQ9NRP0 149 aa16.49■□□□□ 0.23
RAPGEF1-206ENST00000438647 APOBP04114 4563 aaKnown RBP16.49■□□□□ 0.23
RAPGEF1-206ENST00000438647 C15orf54Q8N8G6 183 aa16.48■□□□□ 0.23
RAPGEF1-206ENST00000438647 FRZBQ92765 325 aa16.48■□□□□ 0.23
RAPGEF1-206ENST00000438647 PGLYRP4Q96LB8 373 aa16.48■□□□□ 0.23
RAPGEF1-206ENST00000438647 GFRA4Q9GZZ7 299 aa16.48■□□□□ 0.23
RAPGEF1-206ENST00000438647 Q0VG73 95 aa16.47■□□□□ 0.23
RAPGEF1-206ENST00000438647 TMEM241Q24JQ0 296 aa16.47■□□□□ 0.23
RAPGEF1-206ENST00000438647 NTM-AS1Q6ZSK4 140 aa16.47■□□□□ 0.23
RAPGEF1-206ENST00000438647 NTN5Q8WTR8 489 aaPredicted RBP16.47■□□□□ 0.23
RAPGEF1-206ENST00000438647 TSKUQ8WUA8 353 aa16.47■□□□□ 0.23
RAPGEF1-206ENST00000438647 UBE2WQ96B02 151 aa16.47■□□□□ 0.23
RAPGEF1-206ENST00000438647 FAM231BA6NCW3 169 aa16.46■□□□□ 0.23
RAPGEF1-206ENST00000438647 IQCJQ1A5X6 159 aa16.46■□□□□ 0.23
RAPGEF1-206ENST00000438647 IGHV1-24A0A0C4DH33 117 aa16.45■□□□□ 0.22
RAPGEF1-206ENST00000438647 FUSP35637 526 aaKnown RBP eCLIP16.45■□□□□ 0.22
RAPGEF1-206ENST00000438647 MPV17L2Q567V2 206 aa16.45■□□□□ 0.22
RAPGEF1-206ENST00000438647 Q8N814 137 aa16.45■□□□□ 0.22
RAPGEF1-206ENST00000438647 IGKV2D-24A0A075B6R9 120 aa16.44■□□□□ 0.22
RAPGEF1-206ENST00000438647 HIGD1CA8MV81 97 aa16.44■□□□□ 0.22
RAPGEF1-206ENST00000438647 CRPP02741 224 aa16.44■□□□□ 0.22
RAPGEF1-206ENST00000438647 NAT8Q9UHE5 227 aa16.44■□□□□ 0.22
RAPGEF1-206ENST00000438647 ANGP03950 147 aaKnown RBP16.43■□□□□ 0.22
RAPGEF1-206ENST00000438647 ISOC2Q96AB3 205 aa16.43■□□□□ 0.22
RAPGEF1-206ENST00000438647 IGLV5-52A0A0A0MRZ9 124 aa16.42■□□□□ 0.22
RAPGEF1-206ENST00000438647 A0A1B0GUT8 65 aa16.42■□□□□ 0.22
RAPGEF1-206ENST00000438647 C9JQL5 133 aa16.42■□□□□ 0.22
RAPGEF1-206ENST00000438647 RPL23P62829 140 aaKnown RBP16.42■□□□□ 0.22
RAPGEF1-206ENST00000438647 ATRAIDQ6UW56 229 aa16.42■□□□□ 0.22
RAPGEF1-206ENST00000438647 GATD1Q8NB37 220 aa16.42■□□□□ 0.22
RAPGEF1-206ENST00000438647 GCSHP23434 173 aa16.41■□□□□ 0.22
RAPGEF1-206ENST00000438647 ADIRFQ15847 76 aa16.41■□□□□ 0.22
RAPGEF1-206ENST00000438647 TRAV26-2A0A0B4J265 109 aa16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 SRSF3P84103 164 aaKnown RBP16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 GAGE6Q13070 117 aa16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 COTL1Q14019 142 aa16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 TMEM243Q9BU79 118 aa16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 C1orf43Q9BWL3 253 aa16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 V9GYV3 84 aa16.4■□□□□ 0.22
RAPGEF1-206ENST00000438647 RBX1P62877 108 aa16.39■□□□□ 0.21
RAPGEF1-206ENST00000438647 Q8N976 141 aa16.39■□□□□ 0.21
RAPGEF1-206ENST00000438647 ENHOQ6UWT2 76 aa16.38■□□□□ 0.21
RAPGEF1-206ENST00000438647 MIAQ16674 131 aa16.37■□□□□ 0.21
RAPGEF1-206ENST00000438647 MAPKAPK5-AS1Q8N8E1 139 aa16.37■□□□□ 0.21
RAPGEF1-206ENST00000438647 TMEM191AQ9H0A3 160 aa16.37■□□□□ 0.21
RAPGEF1-206ENST00000438647 LECT2O14960 151 aa16.36■□□□□ 0.21
RAPGEF1-206ENST00000438647 RAB14P61106 215 aa16.36■□□□□ 0.21
RAPGEF1-206ENST00000438647 RIGQ13278 110 aa16.36■□□□□ 0.21
RAPGEF1-206ENST00000438647 WFDC2Q14508 124 aa16.36■□□□□ 0.21
RAPGEF1-206ENST00000438647 BAALCQ8WXS3 180 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms