RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 H7C1H1 209 aa14.01□□□□□ -0.17
VSX1-204ENST00000409958 IGHV3-30P01768 117 aa14.01□□□□□ -0.17
VSX1-204ENST00000409958 IGHV3-33P01772 117 aa14.01□□□□□ -0.17
VSX1-204ENST00000409958 IGHV3-30-3P0DP02 117 aa14.01□□□□□ -0.17
VSX1-204ENST00000409958 IGHV3-30-5P0DP03 117 aa14.01□□□□□ -0.17
VSX1-204ENST00000409958 FOXA3P55318 350 aaPredicted RBP14.01□□□□□ -0.17
VSX1-204ENST00000409958 IBA57-AS1B1ANH7 110 aa14□□□□□ -0.17
VSX1-204ENST00000409958 M0QY20 66 aa14□□□□□ -0.17
VSX1-204ENST00000409958 SUMO4Q6EEV6 95 aa14□□□□□ -0.17
VSX1-204ENST00000409958 SREK1IP1Q8N9Q2 155 aaPredicted RBP14□□□□□ -0.17
VSX1-204ENST00000409958 RAB14P61106 215 aa13.99□□□□□ -0.17
VSX1-204ENST00000409958 RPL23P62829 140 aaKnown RBP13.99□□□□□ -0.17
VSX1-204ENST00000409958 TSKUQ8WUA8 353 aa13.99□□□□□ -0.17
VSX1-204ENST00000409958 ISOC2Q96AB3 205 aa13.99□□□□□ -0.17
VSX1-204ENST00000409958 DNAJC30Q96LL9 226 aa13.99□□□□□ -0.17
VSX1-204ENST00000409958 NAT8Q9UHE5 227 aa13.99□□□□□ -0.17
VSX1-204ENST00000409958 DYNC1H1Q14204 4646 aaKnown RBP13.99□□□□□ -0.17
VSX1-204ENST00000409958 C15orf54Q8N8G6 183 aa13.98□□□□□ -0.17
VSX1-204ENST00000409958 PGLYRP4Q96LB8 373 aa13.98□□□□□ -0.17
VSX1-204ENST00000409958 GFRA4Q9GZZ7 299 aa13.98□□□□□ -0.17
VSX1-204ENST00000409958 FAM231BA6NCW3 169 aa13.97□□□□□ -0.17
VSX1-204ENST00000409958 LAGE3Q14657 143 aa13.97□□□□□ -0.17
VSX1-204ENST00000409958 DAZ4Q86SG3 579 aaKnown RBP13.97□□□□□ -0.17
VSX1-204ENST00000409958 DAZ3Q9NR90 486 aaKnown RBP13.97□□□□□ -0.17
VSX1-204ENST00000409958 TRBV6-8A0A0A6YYG3 113 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 ADIRFQ15847 76 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 TMEM97Q5BJF2 176 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 RASL11AQ6T310 242 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 SMIM15Q7Z3B0 74 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 NIT1Q86X76 327 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 V9GYV3 84 aa13.96□□□□□ -0.17
VSX1-204ENST00000409958 Q8N3U1 123 aa13.95□□□□□ -0.18
VSX1-204ENST00000409958 BORCS7Q96B45 105 aa13.95□□□□□ -0.18
VSX1-204ENST00000409958 URGCP-MRPS24S4R325 110 aa13.95□□□□□ -0.18
VSX1-204ENST00000409958 HIGD1CA8MV81 97 aa13.94□□□□□ -0.18
VSX1-204ENST00000409958 CHCHD7Q9BUK0 85 aa13.94□□□□□ -0.18
VSX1-204ENST00000409958 NIT2Q9NQR4 276 aa13.93□□□□□ -0.18
VSX1-204ENST00000409958 A0A1B0GUT8 65 aa13.92□□□□□ -0.18
VSX1-204ENST00000409958 SPATA12Q7Z6I5 190 aa13.92□□□□□ -0.18
VSX1-204ENST00000409958 FRZBQ92765 325 aa13.92□□□□□ -0.18
VSX1-204ENST00000409958 Q9HAA7 133 aa13.92□□□□□ -0.18
VSX1-204ENST00000409958 A0A087WX48 190 aa13.91□□□□□ -0.18
VSX1-204ENST00000409958 EREGO14944 169 aa13.91□□□□□ -0.18
VSX1-204ENST00000409958 CLLU1Q5K131 121 aa13.91□□□□□ -0.18
VSX1-204ENST00000409958 KCNIP4Q6PIL6 250 aa13.91□□□□□ -0.18
VSX1-204ENST00000409958 NTM-AS1Q6ZSK4 140 aa13.91□□□□□ -0.18
VSX1-204ENST00000409958 GATD1Q8NB37 220 aa13.91□□□□□ -0.18
VSX1-204ENST00000409958 TRAV8-3A0A0A6YYJ7 113 aa13.9□□□□□ -0.18
VSX1-204ENST00000409958 A0A087WTM6 91 aa13.9□□□□□ -0.19
VSX1-204ENST00000409958 C16orf90A8MZG2 172 aa13.9□□□□□ -0.19
VSX1-204ENST00000409958 PSCAO43653 123 aa13.9□□□□□ -0.19
VSX1-204ENST00000409958 PKIAP61925 76 aa13.9□□□□□ -0.19
VSX1-204ENST00000409958 NUP35Q8NFH5 326 aa13.9□□□□□ -0.19
VSX1-204ENST00000409958 TRBV25-1A0A075B6N4 114 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 TRAV26-2A0A0B4J265 109 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 TMEM262E9PQX1 116 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 KRTAP10-2P60368 255 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 ELOBQ15370 118 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 CHCHD5Q9BSY4 110 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 NAT8BQ9UHF3 227 aa13.89□□□□□ -0.19
VSX1-204ENST00000409958 KIAA1109Q2LD37 5005 aa13.88□□□□□ -0.19
VSX1-204ENST00000409958 IFITM2Q01629 132 aa13.88□□□□□ -0.19
VSX1-204ENST00000409958 IQCJQ1A5X6 159 aa13.88□□□□□ -0.19
VSX1-204ENST00000409958 TM2D2Q9BX73 214 aa13.88□□□□□ -0.19
VSX1-204ENST00000409958 TMEM191AQ9H0A3 160 aa13.88□□□□□ -0.19
VSX1-204ENST00000409958 KLK12Q9UKR0 248 aa13.88□□□□□ -0.19
VSX1-204ENST00000409958 RIGQ13278 110 aa13.87□□□□□ -0.19
VSX1-204ENST00000409958 LRP1BQ9NZR2 4599 aa13.86□□□□□ -0.19
VSX1-204ENST00000409958 IGHV1-24A0A0C4DH33 117 aa13.86□□□□□ -0.19
VSX1-204ENST00000409958 SMIM27A0A1W2PRY6 76 aa13.86□□□□□ -0.19
VSX1-204ENST00000409958 HERC2O95714 4834 aa13.85□□□□□ -0.19
VSX1-204ENST00000409958 DNAH5Q8TE73 4624 aa13.85□□□□□ -0.19
VSX1-204ENST00000409958 MPV17L2Q567V2 206 aa13.85□□□□□ -0.19
VSX1-204ENST00000409958 RPL39LQ96EH5 51 aaKnown RBP13.85□□□□□ -0.19
VSX1-204ENST00000409958 PGPEP1Q9NXJ5 209 aa13.85□□□□□ -0.19
VSX1-204ENST00000409958 LRCOL1A6NCL2 159 aa13.84□□□□□ -0.19
VSX1-204ENST00000409958 RMI2Q96E14 147 aa13.84□□□□□ -0.19
VSX1-204ENST00000409958 COX11Q9Y6N1 276 aa13.84□□□□□ -0.19
VSX1-204ENST00000409958 COTL1Q14019 142 aa13.83□□□□□ -0.2
VSX1-204ENST00000409958 ATRAIDQ6UW56 229 aa13.83□□□□□ -0.2
VSX1-204ENST00000409958 UBE2WQ96B02 151 aa13.83□□□□□ -0.2
VSX1-204ENST00000409958 RNF185Q96GF1 192 aa13.83□□□□□ -0.2
VSX1-204ENST00000409958 RAB4AP20338 218 aa13.82□□□□□ -0.2
VSX1-204ENST00000409958 Q0VG73 95 aa13.82□□□□□ -0.2
VSX1-204ENST00000409958 PNRC1Q12796 327 aaPredicted RBP13.82□□□□□ -0.2
VSX1-204ENST00000409958 GAGE6Q13070 117 aa13.82□□□□□ -0.2
VSX1-204ENST00000409958 CDPF1Q6NVV7 123 aa13.82□□□□□ -0.2
VSX1-204ENST00000409958 TMEM243Q9BU79 118 aa13.82□□□□□ -0.2
VSX1-204ENST00000409958 TRBV6-5A0A0K0K1A5 114 aa13.81□□□□□ -0.2
VSX1-204ENST00000409958 ANGP03950 147 aaKnown RBP13.81□□□□□ -0.2
VSX1-204ENST00000409958 AMN1Q8IY45 258 aa13.81□□□□□ -0.2
VSX1-204ENST00000409958 Q8N976 141 aa13.81□□□□□ -0.2
VSX1-204ENST00000409958 MRAP2Q96G30 205 aa13.81□□□□□ -0.2
VSX1-204ENST00000409958 A0A1B0GW15 77 aa13.8□□□□□ -0.2
VSX1-204ENST00000409958 PPP1R2P9O14990 202 aa13.8□□□□□ -0.2
VSX1-204ENST00000409958 RBX1P62877 108 aa13.8□□□□□ -0.2
VSX1-204ENST00000409958 SDHAF1A6NFY7 115 aa13.79□□□□□ -0.2
VSX1-204ENST00000409958 NCR2O95944 276 aa13.79□□□□□ -0.2
VSX1-204ENST00000409958 CRPP02741 224 aa13.79□□□□□ -0.2
VSX1-204ENST00000409958 AMTP48728 403 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms