RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SMR3BP02814 79 aaPredicted RBP19.16■□□□□ 0.66
HMGB1-205ENST00000399494 SRSF3P84103 164 aaKnown RBP19.16■□□□□ 0.66
HMGB1-205ENST00000399494 GTSF1LQ9H1H1 148 aa19.16■□□□□ 0.66
HMGB1-205ENST00000399494 SRRM2Q9UQ35 2752 aaKnown RBP19.15■□□□□ 0.66
HMGB1-205ENST00000399494 OR10J3Q5JRS4 329 aa19.15■□□□□ 0.66
HMGB1-205ENST00000399494 Q9UF83 564 aa19.15■□□□□ 0.66
HMGB1-205ENST00000399494 TRAV8-6A0A0B4J262 113 aa19.14■□□□□ 0.65
HMGB1-205ENST00000399494 TRBV10-1A0A0K0K1A3 114 aa19.14■□□□□ 0.65
HMGB1-205ENST00000399494 C9JQL5 133 aa19.14■□□□□ 0.65
HMGB1-205ENST00000399494 LINC00694P0DN24 101 aa19.14■□□□□ 0.65
HMGB1-205ENST00000399494 CTRLP40313 264 aa19.14■□□□□ 0.65
HMGB1-205ENST00000399494 TMEM241Q24JQ0 296 aa19.14■□□□□ 0.65
HMGB1-205ENST00000399494 A8MWL6 223 aa19.13■□□□□ 0.65
HMGB1-205ENST00000399494 MGPP08493 103 aa19.13■□□□□ 0.65
HMGB1-205ENST00000399494 TRGC1P0CF51 173 aa19.13■□□□□ 0.65
HMGB1-205ENST00000399494 RPL36AP83881 106 aaKnown RBP19.13■□□□□ 0.65
HMGB1-205ENST00000399494 RPL36ALQ969Q0 106 aaKnown RBP19.13■□□□□ 0.65
HMGB1-205ENST00000399494 NTF3P20783 257 aa19.12■□□□□ 0.65
HMGB1-205ENST00000399494 LELP1Q5T871 98 aa19.12■□□□□ 0.65
HMGB1-205ENST00000399494 MYCBP2O75592 4640 aa19.11■□□□□ 0.65
HMGB1-205ENST00000399494 WDR73Q6P4I2 378 aa19.11■□□□□ 0.65
HMGB1-205ENST00000399494 C10orf126Q8N4M7 172 aa19.11■□□□□ 0.65
HMGB1-205ENST00000399494 NAT8Q9UHE5 227 aa19.11■□□□□ 0.65
HMGB1-205ENST00000399494 TWIST1Q15672 202 aa19.1■□□□□ 0.65
HMGB1-205ENST00000399494 CT83Q5H943 113 aa19.1■□□□□ 0.65
HMGB1-205ENST00000399494 C15orf54Q8N8G6 183 aa19.1■□□□□ 0.65
HMGB1-205ENST00000399494 OSTCQ9NRP0 149 aa19.1■□□□□ 0.65
HMGB1-205ENST00000399494 KIF25-AS1Q9Y6Z4 181 aa19.1■□□□□ 0.65
HMGB1-205ENST00000399494 LRCOL1A6NCL2 159 aa19.09■□□□□ 0.65
HMGB1-205ENST00000399494 ADIRFQ15847 76 aa19.09■□□□□ 0.65
HMGB1-205ENST00000399494 GTSF1Q8WW33 167 aa19.09■□□□□ 0.65
HMGB1-205ENST00000399494 TRBV7-3A0A075B6L6 115 aa19.08■□□□□ 0.64
HMGB1-205ENST00000399494 IGHV3-38A0A0C4DH36 116 aa19.08■□□□□ 0.64
HMGB1-205ENST00000399494 RPL23P62829 140 aaKnown RBP19.08■□□□□ 0.64
HMGB1-205ENST00000399494 A0A087WWC5 75 aa19.07■□□□□ 0.64
HMGB1-205ENST00000399494 ISOC2Q96AB3 205 aa19.07■□□□□ 0.64
HMGB1-205ENST00000399494 CNFNQ9BYD5 112 aa19.07■□□□□ 0.64
HMGB1-205ENST00000399494 DPH3P1Q9H4G8 78 aa19.07■□□□□ 0.64
HMGB1-205ENST00000399494 FAM229AH3BQW9 127 aa19.06■□□□□ 0.64
HMGB1-205ENST00000399494 HAMPP81172 84 aa19.06■□□□□ 0.64
HMGB1-205ENST00000399494 NEXN-AS1Q8NBZ9 246 aa19.06■□□□□ 0.64
HMGB1-205ENST00000399494 OR10G8Q8NGN5 311 aa19.06■□□□□ 0.64
HMGB1-205ENST00000399494 BORCS7Q96B45 105 aa19.06■□□□□ 0.64
HMGB1-205ENST00000399494 PGLYRP4Q96LB8 373 aa19.06■□□□□ 0.64
HMGB1-205ENST00000399494 IGLV5-52A0A0A0MRZ9 124 aa19.05■□□□□ 0.64
HMGB1-205ENST00000399494 SREK1IP1Q8N9Q2 155 aaPredicted RBP19.05■□□□□ 0.64
HMGB1-205ENST00000399494 FLG2Q5D862 2391 aaPredicted RBP19.04■□□□□ 0.64
HMGB1-205ENST00000399494 H7C1H1 209 aa19.04■□□□□ 0.64
HMGB1-205ENST00000399494 UBE2D3P61077 147 aa19.04■□□□□ 0.64
HMGB1-205ENST00000399494 UBE2D2P62837 147 aa19.04■□□□□ 0.64
HMGB1-205ENST00000399494 SMIM15Q7Z3B0 74 aa19.04■□□□□ 0.64
HMGB1-205ENST00000399494 TSKUQ8WUA8 353 aa19.04■□□□□ 0.64
HMGB1-205ENST00000399494 TMEM70Q9BUB7 260 aa19.04■□□□□ 0.64
HMGB1-205ENST00000399494 IBA57-AS1B1ANH7 110 aa19.03■□□□□ 0.64
HMGB1-205ENST00000399494 PSCAO43653 123 aa19.03■□□□□ 0.64
HMGB1-205ENST00000399494 LINC01556Q5JQF7 62 aa19.03■□□□□ 0.64
HMGB1-205ENST00000399494 CLLU1Q5K131 121 aa19.03■□□□□ 0.64
HMGB1-205ENST00000399494 NTN5Q8WTR8 489 aaPredicted RBP19.03■□□□□ 0.64
HMGB1-205ENST00000399494 SUMO4Q6EEV6 95 aa19.02■□□□□ 0.64
HMGB1-205ENST00000399494 GFRA4Q9GZZ7 299 aa19.02■□□□□ 0.64
HMGB1-205ENST00000399494 HIGD1CA8MV81 97 aa19.01■□□□□ 0.63
HMGB1-205ENST00000399494 V9GYV3 84 aa19.01■□□□□ 0.63
HMGB1-205ENST00000399494 IGHV3-30P01768 117 aa19■□□□□ 0.63
HMGB1-205ENST00000399494 IGHV3-33P01772 117 aa19■□□□□ 0.63
HMGB1-205ENST00000399494 IGHV3-30-3P0DP02 117 aa19■□□□□ 0.63
HMGB1-205ENST00000399494 IGHV3-30-5P0DP03 117 aa19■□□□□ 0.63
HMGB1-205ENST00000399494 FOXA3P55318 350 aaPredicted RBP19■□□□□ 0.63
HMGB1-205ENST00000399494 IFITM2Q01629 132 aa19■□□□□ 0.63
HMGB1-205ENST00000399494 FAM231BA6NCW3 169 aa18.99■□□□□ 0.63
HMGB1-205ENST00000399494 M0QY20 66 aa18.99■□□□□ 0.63
HMGB1-205ENST00000399494 Q8N814 137 aa18.98■□□□□ 0.63
HMGB1-205ENST00000399494 DNAJC30Q96LL9 226 aa18.98■□□□□ 0.63
HMGB1-205ENST00000399494 FAM30AQ9NZY2 134 aa18.98■□□□□ 0.63
HMGB1-205ENST00000399494 A0A1B0GUT8 65 aa18.97■□□□□ 0.63
HMGB1-205ENST00000399494 RASL11AQ6T310 242 aa18.97■□□□□ 0.63
HMGB1-205ENST00000399494 DAZ4Q86SG3 579 aaKnown RBP18.96■□□□□ 0.63
HMGB1-205ENST00000399494 Q9HAA7 133 aa18.96■□□□□ 0.63
HMGB1-205ENST00000399494 DAZ3Q9NR90 486 aaKnown RBP18.96■□□□□ 0.63
HMGB1-205ENST00000399494 URGCP-MRPS24S4R325 110 aa18.96■□□□□ 0.63
HMGB1-205ENST00000399494 DNAH8Q96JB1 4490 aa18.95■□□□□ 0.62
HMGB1-205ENST00000399494 TMEM97Q5BJF2 176 aa18.93■□□□□ 0.62
HMGB1-205ENST00000399494 NIT2Q9NQR4 276 aa18.93■□□□□ 0.62
HMGB1-205ENST00000399494 NAT8BQ9UHF3 227 aa18.93■□□□□ 0.62
HMGB1-205ENST00000399494 TRBV6-8A0A0A6YYG3 113 aa18.92■□□□□ 0.62
HMGB1-205ENST00000399494 KCNIP4Q6PIL6 250 aa18.92■□□□□ 0.62
HMGB1-205ENST00000399494 NUP35Q8NFH5 326 aa18.92■□□□□ 0.62
HMGB1-205ENST00000399494 Q8N3U1 123 aa18.91■□□□□ 0.62
HMGB1-205ENST00000399494 TRAV26-2A0A0B4J265 109 aa18.9■□□□□ 0.62
HMGB1-205ENST00000399494 RIGQ13278 110 aa18.9■□□□□ 0.62
HMGB1-205ENST00000399494 NIT1Q86X76 327 aa18.9■□□□□ 0.62
HMGB1-205ENST00000399494 A0A087WX48 190 aa18.89■□□□□ 0.61
HMGB1-205ENST00000399494 GATD1Q8NB37 220 aa18.89■□□□□ 0.61
HMGB1-205ENST00000399494 SMIM27A0A1W2PRY6 76 aa18.87■□□□□ 0.61
HMGB1-205ENST00000399494 TMEM262E9PQX1 116 aa18.87■□□□□ 0.61
HMGB1-205ENST00000399494 PNRC1Q12796 327 aaPredicted RBP18.87■□□□□ 0.61
HMGB1-205ENST00000399494 CHCHD5Q9BSY4 110 aa18.87■□□□□ 0.61
HMGB1-205ENST00000399494 TMEM191AQ9H0A3 160 aa18.87■□□□□ 0.61
HMGB1-205ENST00000399494 LAGE3Q14657 143 aa18.86■□□□□ 0.61
HMGB1-205ENST00000399494 TRBV25-1A0A075B6N4 114 aa18.85■□□□□ 0.61
HMGB1-205ENST00000399494 WFDC2Q14508 124 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms