RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 AKAP13Q12802 2813 aa6.17□□□□□ -1.42
CIITA-201ENST00000324288 OPRPNQ99935 248 aaPredicted RBP6.17□□□□□ -1.42
CIITA-201ENST00000324288 CCL24O00175 119 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 GTSF1Q8WW33 167 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 TRBV10-2A0A0K0K1G8 114 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 C9orf47Q6ZRZ4 202 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 NRGNQ92686 78 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 V9GYY9 64 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 C15orf65H3BRN8 121 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 GATA3P23771 443 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 A0A0J9YWU9 116 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 TRBV12-3P01733 135 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 NFE4Q86UQ8 179 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 IGKV4-1P06312 121 aa6.16□□□□□ -1.42
CIITA-201ENST00000324288 Q8TCH9 128 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 RITA1Q96K30 269 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 LTBP1Q14766 1721 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 PRR4Q16378 134 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 DEFB112Q30KQ8 113 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 H0Y9J4 135 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 TCL1BO95988 128 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 C20orf197Q8N268 126 aa6.15□□□□□ -1.42
CIITA-201ENST00000324288 ANKRD17O75179 2603 aaKnown RBP6.15□□□□□ -1.43
CIITA-201ENST00000324288 WI2-2373I1.2A0A1W2PRP0 233 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 PIFOQ8TCI5 191 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 ZNF524Q96C55 264 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 FAM236DA0A1B0GTK5 79 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 LRCOL1A6NCL2 159 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 SLPIP03973 132 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 FAM236CP0DP71 79 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 CCDC179H3BU77 68 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 IGHV4-38-2P0DP08 117 aa6.15□□□□□ -1.43
CIITA-201ENST00000324288 C10orf105Q8TEF2 133 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 IGHV4-30-2A0A087WSY4 118 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 COA6Q5JTJ3 125 aaKnown RBP6.14□□□□□ -1.43
CIITA-201ENST00000324288 PRAC2D3DTV9 90 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 K7ENP7 123 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 C1orf147Q96MC9 270 aaPredicted RBP6.14□□□□□ -1.43
CIITA-201ENST00000324288 PROK2Q9HC23 129 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 Q8N1Y9 231 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 ATP5G1P05496 136 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 SPRNQ5BIV9 151 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 CLUHP3Q96NS8 147 aa6.14□□□□□ -1.43
CIITA-201ENST00000324288 SPANXB1Q9NS25 103 aaPredicted RBP6.13□□□□□ -1.43
CIITA-201ENST00000324288 COX7A2LO14548 114 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 CFPP27918 469 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 HIGD1BQ9P298 99 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 MRPL36Q9P0J6 103 aaKnown RBP6.13□□□□□ -1.43
CIITA-201ENST00000324288 NDUFC2-KCTD14E9PQ53 114 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 ELANEP08246 267 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 K7EQD1 137 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 GP9P14770 177 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 DEFB135Q30KP9 77 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 K7EM74 188 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 PRSS33Q8NF86 280 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 J3QKU1 62 aa6.13□□□□□ -1.43
CIITA-201ENST00000324288 VPREB3Q9UKI3 123 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 SNURFQ9Y675 71 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 TM2D2Q9BX73 214 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 ZNF491Q8N8L2 437 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 CPAMD8Q8IZJ3 1885 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 TEX49A0A1B0GTD5 131 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 C1orf195Q5TG92 126 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 SPANXCQ9NY87 97 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 C3orf22Q8N5N4 141 aa6.12□□□□□ -1.43
CIITA-201ENST00000324288 PRR20EP86478 221 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 PRR20CP86479 221 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 PRR20DP86480 221 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 PRR20BP86481 221 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 PRR20AP86496 221 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 BPY2O14599 106 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 C4orf48Q5BLP8 95 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 H0YGX0 51 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 FOXL2NBQ6ZUU3 175 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 ATP6V0E2Q8NHE4 81 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 C11orf86A6NJI1 115 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 GDF5OSQ5U4N7 250 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 NDUFB1O75438 58 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 C16orf74Q96GX8 76 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 ATRQ13535 2644 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 ODF1Q14990 250 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 CEMP1Q6PRD7 247 aaPredicted RBP6.11□□□□□ -1.43
CIITA-201ENST00000324288 PATE2Q6UY27 113 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 CCL18P55774 89 aa6.11□□□□□ -1.43
CIITA-201ENST00000324288 RSPO1Q2MKA7 263 aaPredicted RBP6.11□□□□□ -1.43
CIITA-201ENST00000324288 FAM240AA0A1B0GVK7 77 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 ENHOQ6UWT2 76 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 C17orf82Q86X59 251 aaPredicted RBP6.1□□□□□ -1.43
CIITA-201ENST00000324288 COX7BP24311 80 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 SIRPDQ9H106 197 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 BLCAPP62952 87 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 TMEM263Q8WUH6 116 aaKnown RBP6.1□□□□□ -1.43
CIITA-201ENST00000324288 RNF138Q8WVD3 245 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 FAM215AQ9Y5M1 114 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 MAST4O15021 2626 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 A0A096LNI7 61 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 IGKV2-24A0A0C4DH68 120 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 P0DMU3 169 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 FAM231AP0DMU4 169 aa6.1□□□□□ -1.43
CIITA-201ENST00000324288 FAM231CP0DMU5 169 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms