RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DENND4AQ7Z401 1863 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 C11orf86A6NJI1 115 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 INTS1Q8N201 2190 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 SCN5AQ14524 2016 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 PAQR4Q8N4S7 273 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 H0YJW9 148 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 ZNF883P0CG24 379 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 MINOS1-NBL1R4GNA1 71 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 HEATR5BQ9P2D3 2071 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 ADAMTSL1Q8N6G6 1762 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 FAM229AH3BQW9 127 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 C10orf25Q5T742 122 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 Q6JHZ5 121 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 TRBV6-6A0A0A6YYG2 114 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 A0A1B0GXF2 115 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 SPART-AS1P0CW21 52 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 C1orf64Q8NEQ6 169 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 PI4KAP42356 2102 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 NDUFB8O95169 186 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 IGLV2-14P01704 120 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 UFSP1Q6NVU6 142 aa5.81□□□□□ -1.48
LIMCH1-201ENST00000313860 G3V318 75 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 ANKRD36A6QL64 1941 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 DEFB135Q30KP9 77 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 RNF185Q96GF1 192 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 TRBV6-8A0A0A6YYG3 113 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 TRBV6-5A0A0K0K1A5 114 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 GRNP28799 593 aaKnown RBP5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 C16orf74Q96GX8 76 aa5.8□□□□□ -1.48
LIMCH1-201ENST00000313860 PDCD11Q14690 1871 aaKnown RBP5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 UBR3Q6ZT12 1888 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 PDE4DIPQ5VU43 2346 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 FOXS1O43638 330 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 NUPR1O60356 82 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 DOCK8Q8NF50 2099 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 IGKV1D-43A0A0B4J1Z2 117 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 ANKRD31Q8N7Z5 1873 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 LCA10Q71F78 164 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 ZNF236Q9UL36 1845 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 TFF2Q03403 129 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 C14orf177Q52M58 125 aa5.79□□□□□ -1.48
LIMCH1-201ENST00000313860 MYO7BQ6PIF6 2116 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 SRCAPQ6ZRS2 3230 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 CISD3P0C7P0 127 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 ZNF702PQ9H963 129 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 LTBP4Q8N2S1 1624 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 IGLV4-3A0A075B6K6 122 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 PATE3B3GLJ2 98 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 TMEM14EPQ6UXP3 125 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 C17orf82Q86X59 251 aaPredicted RBP5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 C6orf48Q9UBA6 75 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 BRWD1Q9NSI6 2320 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 UNC13CQ8NB66 2214 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 COL4A4P53420 1690 aaPredicted RBP5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 TRAV22A0A0B4J277 110 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 LINC00271P0C7V0 271 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 Q8N3U1 123 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 ZNRD1Q9P1U0 126 aa5.78□□□□□ -1.48
LIMCH1-201ENST00000313860 ZGRF1Q86YA3 2104 aa5.77□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC00473A8K010 186 aa5.77□□□□□ -1.49
LIMCH1-201ENST00000313860 CCDC140Q96MF4 163 aa5.77□□□□□ -1.49
LIMCH1-201ENST00000313860 MSRB1Q9NZV6 116 aa5.77□□□□□ -1.49
LIMCH1-201ENST00000313860 M0R2N4 97 aa5.77□□□□□ -1.49
LIMCH1-201ENST00000313860 TMEM92Q6UXU6 159 aa5.77□□□□□ -1.49
LIMCH1-201ENST00000313860 H3BRN7 92 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 XIRP1Q702N8 1843 aaKnown RBP5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 LYPD5Q6UWN5 251 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC01561Q8N1V8 128 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 LTBP3Q9NS15 1303 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 ARFGEF3Q5TH69 2177 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC01590Q5TEZ4 76 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 LINC01600Q96MT4 127 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 TP73-AS1Q9UF72 201 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 SEC16AO15027 2179 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 CKAP5Q14008 2032 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 DHRS4-AS1Q9P1J3 65 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 BTAF1O14981 1849 aa5.76□□□□□ -1.49
LIMCH1-201ENST00000313860 ZNF672Q499Z4 452 aaPredicted RBP5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 B4DSR2 109 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 C10orf91Q5T1B1 145 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 ZFAND2AQ8N6M9 145 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 TDRD15B5MCY1 1934 aaKnown RBP5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 ZNF843Q8N446 348 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 MCM3APO60318 1980 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 TM2D3Q9BRN9 247 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 RNF223E7ERA6 249 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 GDF5OSQ5U4N7 250 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 Q6ZTC4 211 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 PIKFYVEQ9Y2I7 2098 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 PLXNA1Q9UIW2 1896 aa5.75□□□□□ -1.49
LIMCH1-201ENST00000313860 ZNF318Q5VUA4 2279 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 Q6ZS92 163 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 DOCK4Q8N1I0 1966 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 CHCHD10Q8WYQ3 142 aaPredicted RBP5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 CACNA1DQ01668 2161 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 RALGAPA2Q2PPJ7 1873 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 E7EQL1 145 aa5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 RPL28P46779 137 aaKnown RBP5.74□□□□□ -1.49
LIMCH1-201ENST00000313860 CRIPAKQ8N1N5 446 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms