RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 K7EP13 123 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 CTRLP40313 264 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 RPS20P60866 119 aaKnown RBP6.18□□□□□ -1.42
HMGN1-201ENST00000288344 RAB4BP61018 213 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 LINC01551Q86U37 167 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 OR2D3Q8NGH3 330 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 PCNPQ8WW12 178 aaKnown RBP6.18□□□□□ -1.42
HMGN1-201ENST00000288344 PRADC1Q9BSG0 188 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 RNASE7Q9H1E1 156 aaKnown RBP6.18□□□□□ -1.42
HMGN1-201ENST00000288344 GTSF1LQ9H1H1 148 aa6.18□□□□□ -1.42
HMGN1-201ENST00000288344 MUC21A0A0G2JKD1 596 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 TRBV10-1A0A0K0K1A3 114 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 MUC21A0A140T8X8 626 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 F2Z2F3 143 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 UBE2D3P61077 147 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 UBE2D2P62837 147 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 LINC01556Q5JQF7 62 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 LELP1Q5T871 98 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 LYZL1Q6UWQ5 148 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 FER1L6-AS1Q8NA97 138 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 ATP6V0E2Q8NHE4 81 aa6.17□□□□□ -1.42
HMGN1-201ENST00000288344 M0QY20 66 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 P01737 135 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 GCSHP23434 173 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 IFITM2Q01629 132 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 TTC32Q5I0X7 151 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 SMDT1Q9H4I9 107 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 BIN3Q9NQY0 253 aa6.16□□□□□ -1.42
HMGN1-201ENST00000288344 TRBV7-3A0A075B6L6 115 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 IGHV3-38A0A0C4DH36 116 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 GAGE12JA6NER3 117 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 IBA57-AS1B1ANH7 110 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 NTF3P20783 257 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 EVI2AP22794 236 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 GAGE1Q13065 139 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 GAGE4Q13068 117 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 GAGE5Q13069 117 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 NTM-AS1Q6ZSK4 140 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 NEXN-AS1Q8NBZ9 246 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 DAZAP1Q96EP5 407 aaKnown RBP6.15□□□□□ -1.43
HMGN1-201ENST00000288344 KRTAP17-1Q9BYP8 105 aa6.15□□□□□ -1.43
HMGN1-201ENST00000288344 EIF5A2Q9GZV4 153 aaKnown RBP6.15□□□□□ -1.43
HMGN1-201ENST00000288344 RPP21Q9H633 154 aaKnown RBP6.15□□□□□ -1.43
HMGN1-201ENST00000288344 CACNG7P62955 275 aa6.14□□□□□ -1.43
HMGN1-201ENST00000288344 FAM74A4Q5TZK3 123 aa6.14□□□□□ -1.43
HMGN1-201ENST00000288344 OSTCQ9NRP0 149 aa6.14□□□□□ -1.43
HMGN1-201ENST00000288344 V9GYV3 84 aa6.14□□□□□ -1.43
HMGN1-201ENST00000288344 ZNF727A8MUV8 499 aa6.13□□□□□ -1.43
HMGN1-201ENST00000288344 RPL23P62829 140 aaKnown RBP6.13□□□□□ -1.43
HMGN1-201ENST00000288344 FAM74A3Q4VXF1 159 aa6.13□□□□□ -1.43
HMGN1-201ENST00000288344 SOHLH1Q5JUK2 328 aa6.13□□□□□ -1.43
HMGN1-201ENST00000288344 SPANXN1Q5VSR9 72 aa6.13□□□□□ -1.43
HMGN1-201ENST00000288344 ISOC2Q96AB3 205 aa6.13□□□□□ -1.43
HMGN1-201ENST00000288344 SMIM7Q9BQ49 75 aa6.13□□□□□ -1.43
HMGN1-201ENST00000288344 XKRY2A2RUG3 117 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 LRCOL1A6NCL2 159 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 FAM231BA6NCW3 169 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 KRTAP10-2P60368 255 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 TMEM241Q24JQ0 296 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 NIT1Q86X76 327 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 GFRA4Q9GZZ7 299 aa6.12□□□□□ -1.43
HMGN1-201ENST00000288344 TRAV9-2A0A087WT02 112 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 A0A087WWC5 75 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 A8MWL6 223 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 GATCO43716 136 aaKnown RBP6.11□□□□□ -1.43
HMGN1-201ENST00000288344 SSTP61278 116 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 RPL36AP83881 106 aaKnown RBP6.11□□□□□ -1.43
HMGN1-201ENST00000288344 SUMO4Q6EEV6 95 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 MAPKAPK5-AS1Q8N8E1 139 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 TSKUQ8WUA8 353 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 RPL36ALQ969Q0 106 aaKnown RBP6.11□□□□□ -1.43
HMGN1-201ENST00000288344 AP1S3Q96PC3 154 aa6.11□□□□□ -1.43
HMGN1-201ENST00000288344 TRBV6-8A0A0A6YYG3 113 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 TRAV8-6A0A0B4J262 113 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 ERVFC1-1P60608 527 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 PEA15Q15121 130 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 CLLU1Q5K131 121 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 DAZ4Q86SG3 579 aaKnown RBP6.1□□□□□ -1.43
HMGN1-201ENST00000288344 GATD1Q8NB37 220 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 DNAJC30Q96LL9 226 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 DAZ3Q9NR90 486 aaKnown RBP6.1□□□□□ -1.43
HMGN1-201ENST00000288344 PCLOQ9Y6V0 5065 aa6.1□□□□□ -1.43
HMGN1-201ENST00000288344 A0A087WTM6 91 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 SMIM27A0A1W2PRY6 76 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 GAS8-AS1O95177 125 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 LAGE3Q14657 143 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 ZNF56Q15929 161 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 OR10J3Q5JRS4 329 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 ATRAIDQ6UW56 229 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 NFE4Q86UQ8 179 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 C10orf126Q8N4M7 172 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 NUP35Q8NFH5 326 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 FRZBQ92765 325 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 RNF185Q96GF1 192 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 TPPP3Q9BW30 176 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 DPH3P1Q9H4G8 78 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 NIT2Q9NQR4 276 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 NAT8Q9UHE5 227 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 ABCA13Q86UQ4 5058 aa6.09□□□□□ -1.43
HMGN1-201ENST00000288344 HIGD1CA8MV81 97 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms