RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 DNAH3Q8TD57 4116 aa-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 FRYQ5TBA9 3013 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 ADGRG4Q8IZF6 3080 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 BOD1L1Q8NFC6 3051 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 TRAV17A0A0B4J275 112 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 TRBV27A0A0K0K1C4 114 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 IFNA21P01568 189 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 SLC25A4P12235 298 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 HSD11B1P28845 292 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 ELOF1P60002 83 aaKnown RBP-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 BLCAPP62952 87 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 GNG3P63215 75 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 FADDQ13158 208 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 DEFB109BQ30KR1 87 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 Q5VSD8 79 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 LINC00305Q7Z4B0 112 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 TEX29Q8N6K0 151 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 OR51A4Q8NGJ6 313 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 DYDC1Q8WWB3 177 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 DNAH2Q9P225 4427 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 SVEP1Q4LDE5 3571 aa-0.72□□□□□ -2.52
SCN1A-208ENST00000625916 RELNP78509 3460 aa-0.72□□□□□ -2.53
SCN1A-208ENST00000625916 APOBP04114 4563 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 CRYBG3Q68DQ2 2970 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 TRAV13-1A0A0B4J241 112 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 IGHV1-24A0A0C4DH33 117 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 TMEM210A6NLX4 147 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 OR2H2O95918 312 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 ADCYAP1P18509 176 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 CKS2P33552 79 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 SRP9P49458 86 aaKnown RBP-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 SPCS2Q15005 226 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 FAM24BQ8N5W8 94 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 MORN4Q8NDC4 146 aa-0.73□□□□□ -2.53
SCN1A-208ENST00000625916 CFAP54Q96N23 3096 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 RBAKDNA6NC62 111 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 COX4I1P13073 169 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 S100A11P31949 105 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 TCTAP57738 103 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 BASP1P80723 227 aaKnown RBP-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 SMIM20Q8N5G0 67 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 VPS25Q9BRG1 176 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 CYP4F30PQ9H0H9 118 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 TMEM242Q9NWH2 141 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 LAMTOR2Q9Y2Q5 125 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 ANKRD31Q8N7Z5 1873 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 MYH2Q9UKX2 1941 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 PKHD1L1Q86WI1 4243 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 FAM135BQ49AJ0 1406 aa-0.74□□□□□ -2.53
SCN1A-208ENST00000625916 NHSL1Q5SYE7 1610 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 CSPG4Q6UVK1 2322 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 VIRMAQ69YN4 1812 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 MYH9P35579 1960 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 MAP1LC3B2A6NCE7 125 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 H3BMG7 143 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 CRYGSP22914 178 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 ASIPP42127 132 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 TAS2R41P59536 307 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 SPAG11BQ08648 103 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 WFDC2Q14508 124 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 KRTAP8-1Q8IUC2 63 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 STX19Q8N4C7 294 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 OR4S1Q8NGB4 309 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 OTOSQ8NHW6 89 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 LXNQ9BS40 222 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 FREM2Q5SZK8 3169 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 PTPRGP23470 1445 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 SZT2Q5T011 3432 aa-0.75□□□□□ -2.53
SCN1A-208ENST00000625916 TCRBV3S1A0A5B6 114 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 M0R3E3 92 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 PGRMC1O00264 195 aaKnown RBP-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 TMED4Q7Z7H5 227 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 PPDPFLQ8WWR9 84 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 YTHDC2Q9H6S0 1430 aaKnown RBP-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 SSC5DA1L4H1 1573 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 LRP5O75197 1615 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 CEP290O15078 2479 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 MUC3AQ02505 3323 aa-0.76□□□□□ -2.53
SCN1A-208ENST00000625916 PDE4DIPQ5VU43 2346 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 PLCE1Q9P212 2302 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 URB1O60287 2271 aaKnown RBP-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 DNAH6Q9C0G6 4158 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 PNMA8CA0A1B0GUJ8 204 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 HBDP02042 147 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 TFF1P04155 84 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 DEFA5Q01523 94 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 SSBP3-AS1Q7Z2R9 100 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 UBE2DNLQ8IWF7 75 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 PRO0255Q9UI72 69 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 UFC1Q9Y3C8 167 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 SPG11Q96JI7 2443 aa-0.77□□□□□ -2.53
SCN1A-208ENST00000625916 ANK3Q12955 4377 aaKnown RBP-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 PLXNA1Q9UIW2 1896 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 LAMB1P07942 1786 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 BIVM-ERCC5R4GMW8 1640 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 SPTBN1Q01082 2364 aaKnown RBP-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 REV3LO60673 3130 aa-0.78□□□□□ -2.53
SCN1A-208ENST00000625916 A0A087WTM6 91 aa-0.78□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms