RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TMEM242Q9NWH2 141 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 RYR3Q15413 4870 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 A0A096LPF7 62 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 XKRY2A2RUG3 117 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 PPP1R2P9O14990 202 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 NXPH4O95158 308 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 GATA1P15976 413 aaPredicted RBP11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 ZFP2Q6ZN57 461 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 FAM231DQ6ZW35 169 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 SFRP2Q96HF1 295 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 SAMD10Q9BYL1 202 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 RPP21Q9H633 154 aaKnown RBP11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 RYR2Q92736 4967 aa11.49□□□□□ -0.57
CCDC28A-202ENST00000611852 MUC21A0A0G2JKD1 596 aa11.49□□□□□ -0.57
CCDC28A-202ENST00000611852 MUC21A0A140T8X8 626 aa11.49□□□□□ -0.57
CCDC28A-202ENST00000611852 UFSP1Q6NVU6 142 aa11.49□□□□□ -0.57
CCDC28A-202ENST00000611852 FER1L6-AS1Q8NA97 138 aa11.49□□□□□ -0.57
CCDC28A-202ENST00000611852 DNAH1Q9P2D7 4330 aa11.48□□□□□ -0.57
CCDC28A-202ENST00000611852 UBE2DNLQ8IWF7 75 aa11.48□□□□□ -0.57
CCDC28A-202ENST00000611852 C15orf54Q8N8G6 183 aa11.48□□□□□ -0.57
CCDC28A-202ENST00000611852 ICOSQ9Y6W8 199 aa11.48□□□□□ -0.57
CCDC28A-202ENST00000611852 HYDINQ4G0P3 5121 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 TRBV6-4A0A1B0GX49 114 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 CRYGDP07320 174 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 ERVFC1-1P60608 527 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 SPANXN1Q5VSR9 72 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 SLC25A29Q8N8R3 303 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 TPPP3Q9BW30 176 aa11.47□□□□□ -0.57
CCDC28A-202ENST00000611852 A0A087WWL8 130 aa11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 K7EQD1 137 aa11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 GATCO43716 136 aaKnown RBP11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 GYPEP15421 78 aa11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 CCL18P55774 89 aa11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 MRPL23Q16540 153 aaKnown RBP11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 Q6ZSN1 163 aa11.46□□□□□ -0.57
CCDC28A-202ENST00000611852 LOC100131303A0A0U1RQF7 123 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 A0A1W2PPQ1 181 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 F2Z2F3 143 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 RHODO00212 210 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 S100PP25815 95 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 SSTP61278 116 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 ESRGQ1W209 222 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 FAM74A4Q5TZK3 123 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 OR10G8Q8NGN5 311 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 LINC00588Q9Y4M8 146 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 LYZL1Q6UWQ5 148 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 OSTCQ9NRP0 149 aa11.45□□□□□ -0.58
CCDC28A-202ENST00000611852 SRIP30626 198 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 CTRLP40313 264 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 FAM3BP58499 235 aaPredicted RBP11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 RHOHQ15669 191 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 CT83Q5H943 113 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 KCNIP4Q6PIL6 250 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 GTSF1Q8WW33 167 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 PRADC1Q9BSG0 188 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 URGCP-MRPS24S4R325 110 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 VPS13DQ5THJ4 4388 aa11.44□□□□□ -0.58
CCDC28A-202ENST00000611852 KMT2AQ03164 3969 aa11.43□□□□□ -0.58
CCDC28A-202ENST00000611852 A8MWL6 223 aa11.43□□□□□ -0.58
CCDC28A-202ENST00000611852 CACNG7P62955 275 aa11.43□□□□□ -0.58
CCDC28A-202ENST00000611852 NEGR1Q7Z3B1 354 aa11.43□□□□□ -0.58
CCDC28A-202ENST00000611852 MSRB1Q9NZV6 116 aa11.43□□□□□ -0.58
CCDC28A-202ENST00000611852 COLCA2A8K830 154 aa11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 ELOBQ15370 118 aa11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 C14orf178Q8N769 122 aaPredicted RBP11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 AP1S3Q96PC3 154 aa11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 IMMP2LQ96T52 175 aa11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 CNFNQ9BYD5 112 aa11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 TMA7Q9Y2S6 64 aaKnown RBP11.42□□□□□ -0.58
CCDC28A-202ENST00000611852 WDR73Q6P4I2 378 aa11.41□□□□□ -0.58
CCDC28A-202ENST00000611852 ZNRF2Q8NHG8 242 aa11.41□□□□□ -0.58
CCDC28A-202ENST00000611852 YPEL4Q96NS1 127 aa11.41□□□□□ -0.58
CCDC28A-202ENST00000611852 KIF25-AS1Q9Y6Z4 181 aa11.41□□□□□ -0.58
CCDC28A-202ENST00000611852 V9GYV3 84 aa11.41□□□□□ -0.58
CCDC28A-202ENST00000611852 NTF3P20783 257 aa11.4□□□□□ -0.58
CCDC28A-202ENST00000611852 FOXA3P55318 350 aaPredicted RBP11.4□□□□□ -0.58
CCDC28A-202ENST00000611852 LYPD5Q6UWN5 251 aa11.4□□□□□ -0.58
CCDC28A-202ENST00000611852 TSKUQ8WUA8 353 aa11.4□□□□□ -0.58
CCDC28A-202ENST00000611852 Q9UF83 564 aa11.4□□□□□ -0.58
CCDC28A-202ENST00000611852 RAB5AP20339 215 aa11.4□□□□□ -0.59
CCDC28A-202ENST00000611852 SH2D6Q7Z4S9 175 aa11.4□□□□□ -0.59
CCDC28A-202ENST00000611852 BTF3L4Q96K17 158 aa11.4□□□□□ -0.59
CCDC28A-202ENST00000611852 UPK3BQ9BT76 320 aa11.4□□□□□ -0.59
CCDC28A-202ENST00000611852 MRPS16Q9Y3D3 137 aaKnown RBP11.4□□□□□ -0.59
CCDC28A-202ENST00000611852 TRBV24-1A0A075B6N3 115 aa11.39□□□□□ -0.59
CCDC28A-202ENST00000611852 SMIM17P0DL12 118 aa11.39□□□□□ -0.59
CCDC28A-202ENST00000611852 LINC00315P59091 139 aa11.39□□□□□ -0.59
CCDC28A-202ENST00000611852 RAB4BP61018 213 aa11.39□□□□□ -0.59
CCDC28A-202ENST00000611852 ZNF56Q15929 161 aa11.39□□□□□ -0.59
CCDC28A-202ENST00000611852 GFRA4Q9GZZ7 299 aa11.39□□□□□ -0.59
CCDC28A-202ENST00000611852 IGLV2-18A0A075B6J9 118 aa11.38□□□□□ -0.59
CCDC28A-202ENST00000611852 TGIF2-C20orf24A0A0A6YYL0 155 aa11.38□□□□□ -0.59
CCDC28A-202ENST00000611852 FAM231BA6NCW3 169 aa11.38□□□□□ -0.59
CCDC28A-202ENST00000611852 TWIST1Q15672 202 aa11.38□□□□□ -0.59
CCDC28A-202ENST00000611852 PGLYRP4Q96LB8 373 aa11.38□□□□□ -0.59
CCDC28A-202ENST00000611852 TRAV9-1A0A075B6T8 112 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 GAGE12JA6NER3 117 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 HIGD1CA8MV81 97 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 TRGC1P0CF51 173 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 LINC00694P0DN24 101 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms