RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 KCNIP4Q6PIL6 250 aa7.46□□□□□ -1.22
CLIP3-203ENST00000586457 OR2D3Q8NGH3 330 aa7.46□□□□□ -1.22
CLIP3-203ENST00000586457 JPT2Q9H910 190 aa7.46□□□□□ -1.22
CLIP3-203ENST00000586457 URGCP-MRPS24S4R325 110 aa7.46□□□□□ -1.22
CLIP3-203ENST00000586457 A0A087WWC5 75 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 IGHV3-38A0A0C4DH36 116 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 A0A1B0GVG6 124 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 CXCL1P09341 107 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 TIRAPP58753 221 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 RPL36AP83881 106 aaKnown RBP7.45□□□□□ -1.22
CLIP3-203ENST00000586457 TNP2Q05952 138 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 ZNF56Q15929 161 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 WFDC10BQ8IUB3 73 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 RPL36ALQ969Q0 106 aaKnown RBP7.45□□□□□ -1.22
CLIP3-203ENST00000586457 SAMD10Q9BYL1 202 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 SCRT2Q9NQ03 307 aa7.45□□□□□ -1.22
CLIP3-203ENST00000586457 MUC21A0A0G2JKD1 596 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 MUC21A0A140T8X8 626 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 PSCAO43653 123 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 OR5AL1P0C617 328 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 LINC00315P59091 139 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 RAB4BP61018 213 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 LELP1Q5T871 98 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 MSRB1Q9NZV6 116 aa7.44□□□□□ -1.22
CLIP3-203ENST00000586457 F2Z2F3 143 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 DNAH10OSP0CZ25 163 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 CACNG7P62955 275 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 Q6ZSN1 163 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 C14orf178Q8N769 122 aaPredicted RBP7.43□□□□□ -1.22
CLIP3-203ENST00000586457 FER1L6-AS1Q8NA97 138 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 OR10AG1Q8NH19 301 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 AP1S3Q96PC3 154 aa7.43□□□□□ -1.22
CLIP3-203ENST00000586457 TRBV10-1A0A0K0K1A3 114 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 A0A1B0GVY2 172 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 TMEM250H0YL14 139 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 IGHV3-30P01768 117 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 IGHV3-33P01772 117 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 IGHV3-30-3P0DP02 117 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 IGHV3-30-5P0DP03 117 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 GZMBP10144 247 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 ERVFC1-1P60608 527 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 SSBP4Q9BWG4 385 aaPredicted RBP7.42□□□□□ -1.22
CLIP3-203ENST00000586457 KRTAP1-5Q9BYS1 174 aa7.42□□□□□ -1.22
CLIP3-203ENST00000586457 TRBV7-3A0A075B6L6 115 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 C16orf90A8MZG2 172 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 H7C1H1 209 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 SNAI2O43623 268 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 IGLV2-8P01709 118 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 MGPP08493 103 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 TOR2AQ5JU69 321 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 UFSP1Q6NVU6 142 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 SMIM15Q7Z3B0 74 aa7.41□□□□□ -1.22
CLIP3-203ENST00000586457 A0A087WX48 190 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 C19orf71A6NCJ1 209 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 TMEM262E9PQX1 116 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 TRGC1P0CF51 173 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 LINC01556Q5JQF7 62 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 SPATA12Q7Z6I5 190 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 NUDT10Q8NFP7 164 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 OCC1Q8TAD7 63 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 BORCS7Q96B45 105 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 NUDT11Q96G61 164 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 RPP21Q9H633 154 aaKnown RBP7.4□□□□□ -1.22
CLIP3-203ENST00000586457 TNFRSF18Q9Y5U5 241 aa7.4□□□□□ -1.22
CLIP3-203ENST00000586457 EPPK1P58107 5090 aaKnown RBP7.39□□□□□ -1.23
CLIP3-203ENST00000586457 ZNF727A8MUV8 499 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 GATCO43716 136 aaKnown RBP7.39□□□□□ -1.23
CLIP3-203ENST00000586457 ELOBQ15370 118 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 TWIST1Q15672 202 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 LYZL1Q6UWQ5 148 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 ZNF575Q86XF7 245 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 LYPD6BQ8NI32 183 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 SMIM7Q9BQ49 75 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 TM2D2Q9BX73 214 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 RNASE7Q9H1E1 156 aaKnown RBP7.39□□□□□ -1.23
CLIP3-203ENST00000586457 Q9HAA7 133 aa7.39□□□□□ -1.23
CLIP3-203ENST00000586457 TRBV20OR9-2A0A075B6H5 130 aa7.38□□□□□ -1.23
CLIP3-203ENST00000586457 TRAV8-3A0A0A6YYJ7 113 aa7.38□□□□□ -1.23
CLIP3-203ENST00000586457 IBA57-AS1B1ANH7 110 aa7.38□□□□□ -1.23
CLIP3-203ENST00000586457 TMEM97Q5BJF2 176 aa7.38□□□□□ -1.23
CLIP3-203ENST00000586457 FAM210AQ96ND0 272 aa7.38□□□□□ -1.23
CLIP3-203ENST00000586457 DNAH6Q9C0G6 4158 aa7.38□□□□□ -1.23
CLIP3-203ENST00000586457 A8MWL6 223 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 IGLC6P0CF74 106 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 NTF3P20783 257 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 PKIAP61925 76 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 PEA15Q15121 130 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 WDR73Q6P4I2 378 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 RMI2Q96E14 147 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 PGPEP1Q9NXJ5 209 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 Q9UF83 564 aa7.37□□□□□ -1.23
CLIP3-203ENST00000586457 FRAS1Q86XX4 4008 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 UBE2D3P61077 147 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 UBE2D2P62837 147 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 TEX261Q6UWH6 196 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 DAZ4Q86SG3 579 aaKnown RBP7.36□□□□□ -1.23
CLIP3-203ENST00000586457 C15orf54Q8N8G6 183 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 OR10G8Q8NGN5 311 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 DNAJC30Q96LL9 226 aa7.36□□□□□ -1.23
CLIP3-203ENST00000586457 CHCHD5Q9BSY4 110 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms