RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 U3KQA8 63 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 BPTFQ12830 3046 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 CHD3Q12873 2000 aaKnown RBP2.17□□□□□ -2.06
NUP88-209ENST00000574855 SNRNP200O75643 2136 aaKnown RBP2.17□□□□□ -2.06
NUP88-209ENST00000574855 GTF3C1Q12789 2109 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 IGLV3-9A0A075B6K5 115 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 TRBV24-1A0A075B6N3 115 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.17□□□□□ -2.06
NUP88-209ENST00000574855 C17orf51A8MQB3 221 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 OOSP1A8MZH6 123 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 H3BMM0 161 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 H3BT86 120 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 LY6HO94772 140 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 SIX6O95475 246 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 SFT2D2O95562 160 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 PMP2P02689 132 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 TPT1P13693 172 aaKnown RBP2.17□□□□□ -2.06
NUP88-209ENST00000574855 AKR1C1Q04828 323 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 EBI3Q14213 229 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 ZNF345Q14585 488 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 LINC01545Q5VT33 79 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 Q6AWC8 147 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 ZNF660Q6AZW8 331 aaPredicted RBP2.17□□□□□ -2.06
NUP88-209ENST00000574855 IGFL3Q6UXB1 125 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 LYPD6Q86Y78 171 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 OR5AS1Q8N127 324 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 Q8N2B8 174 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 DEFB123Q8N688 67 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 MIR7-3HGQ8N6C7 128 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 LSM10Q969L4 123 aaKnown RBP2.17□□□□□ -2.06
NUP88-209ENST00000574855 UBE2WQ96B02 151 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 NMES1Q9C002 83 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 ZNRD1Q9P1U0 126 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 U3KQK5 164 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 MYO9BQ13459 2157 aa2.17□□□□□ -2.06
NUP88-209ENST00000574855 DNAH12Q6ZR08 3092 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 IGHV3-15A0A0B4J1V0 119 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 MUC21A0A0G2JKD1 596 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 A0A1W2PRS3 328 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 RPL36A-HNRNPH2H7BZ11 118 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 IGLV3-1P01715 115 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 IGLC1P0CG04 106 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 CRYGAP11844 174 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 KLRD1Q13241 179 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 MIAQ16674 131 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 FAM74A1Q5RGS3 127 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 SDIM1Q6ZPB5 146 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 OR4X2Q8NGF9 303 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 SMCR5Q8TEV8 140 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 PPP1R1CQ8WVI7 109 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 COPS9Q8WXC6 57 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 ARHGAP5-AS1Q96IT6 56 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 PROK2Q9HC23 129 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 SERP1Q9Y6X1 66 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 THADAQ6YHU6 1953 aa2.16□□□□□ -2.06
NUP88-209ENST00000574855 IGKV1OR2-108A0A075B7D4 117 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 TRBV6-7A0A0A0MS04 114 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 TRAV14DV4A0A0A6YYC5 116 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 TRGV5A0A0B4J1U4 118 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 A0A0B4J2C4 111 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 C3orf85A0A1B0GTC6 90 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 CRYM-AS1A6NIL9 109 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 A8MUU9 505 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 TMEM262E9PQX1 116 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 G3V3Q6 166 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 SDCBPO00560 298 aaPredicted RBP2.15□□□□□ -2.07
NUP88-209ENST00000574855 CFDP00746 253 aaPredicted RBP2.15□□□□□ -2.07
NUP88-209ENST00000574855 NPYP01303 97 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 TRACP01848 142 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 PRB2P02812 416 aaPredicted RBP2.15□□□□□ -2.07
NUP88-209ENST00000574855 NMBP08949 121 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 BLCAPP62952 87 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 SUPT4H1P63272 117 aaKnown RBP2.15□□□□□ -2.07
NUP88-209ENST00000574855 MPV17LQ2QL34 196 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 MIC13Q5XKP0 118 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 ALKAL2Q6UX46 152 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 Q6ZS92 163 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 Q8IYB0 196 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 FAM216BQ8N7L0 139 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 VAMP8Q9BV40 100 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 ZNF355PQ9NSJ1 428 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 LINC00312Q9Y6C7 94 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 ICOSQ9Y6W8 199 aa2.15□□□□□ -2.07
NUP88-209ENST00000574855 ARHGAP21Q5T5U3 1957 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 TNRC6AQ8NDV7 1962 aaKnown RBP2.14□□□□□ -2.07
NUP88-209ENST00000574855 SPAG17Q6Q759 2223 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 UNC13CQ8NB66 2214 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.14□□□□□ -2.07
NUP88-209ENST00000574855 IGHV3-73A0A0B4J1V6 119 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 GRIFINA4D1Z8 144 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 M0R2P5 195 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 ZNF737O75373 536 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 APOC3P02656 99 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 RBP4P02753 201 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 MT-ATP8P03928 68 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 FABP4P15090 132 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 FUSP35637 526 aaKnown RBP eCLIP2.14□□□□□ -2.07
NUP88-209ENST00000574855 RPL28P46779 137 aaKnown RBP2.14□□□□□ -2.07
NUP88-209ENST00000574855 MRPS36P82909 103 aaKnown RBP2.14□□□□□ -2.07
NUP88-209ENST00000574855 PEA15Q15121 130 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms