RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GNG13Q9P2W3 67 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 A0A087WWC5 75 aa10.82□□□□□ -0.68
CCDC88C-209ENST00000554872 TRBV10-1A0A0K0K1A3 114 aa10.82□□□□□ -0.68
CCDC88C-209ENST00000554872 IBA57-AS1B1ANH7 110 aa10.82□□□□□ -0.68
CCDC88C-209ENST00000554872 LAGE3Q14657 143 aa10.82□□□□□ -0.68
CCDC88C-209ENST00000554872 PGPEP1Q9NXJ5 209 aa10.82□□□□□ -0.68
CCDC88C-209ENST00000554872 TMSB15BA0A087X1C1 80 aa10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 EREGO14944 169 aa10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 PDE6DO43924 150 aa10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 TAGLN2P37802 199 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 MEF2BQ02080 365 aaPredicted RBP10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 OR10J3Q5JRS4 329 aa10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 TNFRSF18Q9Y5U5 241 aa10.81□□□□□ -0.68
CCDC88C-209ENST00000554872 M0R381 172 aa10.8□□□□□ -0.68
CCDC88C-209ENST00000554872 IFNA1P01562 189 aa10.8□□□□□ -0.68
CCDC88C-209ENST00000554872 AKAP14Q86UN6 197 aa10.8□□□□□ -0.68
CCDC88C-209ENST00000554872 C14orf178Q8N769 122 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-209ENST00000554872 DERL1Q9BUN8 251 aa10.8□□□□□ -0.68
CCDC88C-209ENST00000554872 RYR1P21817 5038 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 A0A087WTM6 91 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 GAGE12JA6NER3 117 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 BCL2P10415 239 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 GAGE1Q13065 139 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 GAGE4Q13068 117 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 GAGE5Q13069 117 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 GAGE13Q4V321 117 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 CENPWQ5EE01 88 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 C9orf62Q8N4C0 152 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 HSPG2P98160 4391 aa10.79□□□□□ -0.68
CCDC88C-209ENST00000554872 IGLV2-8P01709 118 aa10.78□□□□□ -0.68
CCDC88C-209ENST00000554872 RPL19P84098 196 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-209ENST00000554872 FAM74A4Q5TZK3 123 aa10.78□□□□□ -0.68
CCDC88C-209ENST00000554872 OR10G8Q8NGN5 311 aa10.78□□□□□ -0.68
CCDC88C-209ENST00000554872 OR10AG1Q8NH19 301 aa10.78□□□□□ -0.68
CCDC88C-209ENST00000554872 Q9UF83 564 aa10.78□□□□□ -0.68
CCDC88C-209ENST00000554872 A0A087WWL8 130 aa10.77□□□□□ -0.69
CCDC88C-209ENST00000554872 RAB4BP61018 213 aa10.77□□□□□ -0.69
CCDC88C-209ENST00000554872 PRR27Q6MZM9 219 aa10.77□□□□□ -0.69
CCDC88C-209ENST00000554872 VAX2Q9UIW0 290 aa10.77□□□□□ -0.69
CCDC88C-209ENST00000554872 C19orf71A6NCJ1 209 aa10.76□□□□□ -0.69
CCDC88C-209ENST00000554872 DNAH5Q8TE73 4624 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 TRBV20OR9-2A0A075B6H5 130 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 TRBV7-3A0A075B6L6 115 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 IGLC6P0CF74 106 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 GNG4P50150 75 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 RPS20P60866 119 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 UBE2D3P61077 147 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 UBE2D2P62837 147 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 RPL36AP83881 106 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 RPL36ALQ969Q0 106 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 CHCHD7Q9BUK0 85 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 KRTAP17-1Q9BYP8 105 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 BIN3Q9NQY0 253 aa10.75□□□□□ -0.69
CCDC88C-209ENST00000554872 LRCOL1A6NCL2 159 aa10.74□□□□□ -0.69
CCDC88C-209ENST00000554872 SPANXN1Q5VSR9 72 aa10.74□□□□□ -0.69
CCDC88C-209ENST00000554872 APOBP04114 4563 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-209ENST00000554872 IGHV3-30P01768 117 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 IGHV3-33P01772 117 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 IGHV3-30-3P0DP02 117 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 IGHV3-30-5P0DP03 117 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 TOR2AQ5JU69 321 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 LYPD6BQ8NI32 183 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 AP1S3Q96PC3 154 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 KIF25-AS1Q9Y6Z4 181 aa10.73□□□□□ -0.69
CCDC88C-209ENST00000554872 TRAV8-3A0A0A6YYJ7 113 aa10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 XKRY2A2RUG3 117 aa10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 RAB19A4D1S5 217 aa10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 NIT1Q86X76 327 aa10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 NTN5Q8WTR8 489 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 DAZAP1Q96EP5 407 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 TM2D2Q9BX73 214 aa10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 MED9Q9NWA0 146 aa10.72□□□□□ -0.69
CCDC88C-209ENST00000554872 PCLOQ9Y6V0 5065 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 F2Z2F3 143 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 PSCAO43653 123 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 NDUFS6O75380 124 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 BLOC1S1P78537 153 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 ZNF56Q15929 161 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 FER1L6-AS1Q8NA97 138 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 NEXN-AS1Q8NBZ9 246 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 OR2D3Q8NGH3 330 aa10.71□□□□□ -0.69
CCDC88C-209ENST00000554872 TMEM250H0YL14 139 aa10.7□□□□□ -0.7
CCDC88C-209ENST00000554872 P01737 135 aa10.7□□□□□ -0.7
CCDC88C-209ENST00000554872 CACNG7P62955 275 aa10.7□□□□□ -0.7
CCDC88C-209ENST00000554872 COX11Q9Y6N1 276 aa10.7□□□□□ -0.7
CCDC88C-209ENST00000554872 hCG_2014768A0A024R1R8 64 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 TRBV6-8A0A0A6YYG3 113 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 WDR73Q6P4I2 378 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 DAZ4Q86SG3 579 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 Q8N1X5 172 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 Q8N3U1 123 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 MAPKAPK5-AS1Q8N8E1 139 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 CNFNQ9BYD5 112 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 Q9HAA7 133 aa10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 DAZ3Q9NR90 486 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-209ENST00000554872 SMIM17P0DL12 118 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 CTRLP40313 264 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 ELOBQ15370 118 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 TMEM97Q5BJF2 176 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 ATRAIDQ6UW56 229 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms