RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 LY96Q9Y6Y9 160 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 XKRY2A2RUG3 117 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 RHODO00212 210 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 RAB14P61106 215 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 RHOHQ15669 191 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 NEGR1Q7Z3B1 354 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 LINC01551Q86U37 167 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 PRADC1Q9BSG0 188 aa9.73□□□□□ -0.85
PTCH1-226ENST00000553011 MRPS16Q9Y3D3 137 aaKnown RBP9.73□□□□□ -0.85
PTCH1-226ENST00000553011 GATCO43716 136 aaKnown RBP9.72□□□□□ -0.85
PTCH1-226ENST00000553011 LYPD5Q6UWN5 251 aa9.72□□□□□ -0.85
PTCH1-226ENST00000553011 FAM231DQ6ZW35 169 aa9.72□□□□□ -0.85
PTCH1-226ENST00000553011 C14orf178Q8N769 122 aaPredicted RBP9.72□□□□□ -0.85
PTCH1-226ENST00000553011 Q9UF83 564 aa9.72□□□□□ -0.85
PTCH1-226ENST00000553011 ERVFC1-1P60608 527 aa9.71□□□□□ -0.86
PTCH1-226ENST00000553011 LYZL1Q6UWQ5 148 aa9.71□□□□□ -0.86
PTCH1-226ENST00000553011 UPK3BQ9BT76 320 aa9.71□□□□□ -0.86
PTCH1-226ENST00000553011 SMDT1Q9H4I9 107 aa9.71□□□□□ -0.86
PTCH1-226ENST00000553011 MSRB1Q9NZV6 116 aa9.71□□□□□ -0.86
PTCH1-226ENST00000553011 DNAH10Q8IVF4 4471 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 A0A1W2PPQ1 181 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 TMEM241Q24JQ0 296 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 FAM74A3Q4VXF1 159 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 CLLU1Q5K131 121 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 Q6ZR54 194 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 Q9H8V8 135 aa9.7□□□□□ -0.86
PTCH1-226ENST00000553011 GAGE12JA6NER3 117 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 F2Z2F3 143 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 CTRLP40313 264 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 RPL23P62829 140 aaKnown RBP9.69□□□□□ -0.86
PTCH1-226ENST00000553011 CACNG7P62955 275 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 GAGE1Q13065 139 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 GAGE4Q13068 117 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 GAGE5Q13069 117 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 GAGE13Q4V321 117 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 SOHLH1Q5JUK2 328 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 GTSF1Q8WW33 167 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 AP1S3Q96PC3 154 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 NAT8Q9UHE5 227 aa9.69□□□□□ -0.86
PTCH1-226ENST00000553011 NBDYA0A0U1RRE5 68 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 LINC00694P0DN24 101 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 ADIRFQ15847 76 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 ZNF56Q15929 161 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 SH2D6Q7Z4S9 175 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 ISOC2Q96AB3 205 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 OSTCQ9NRP0 149 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 KIF25-AS1Q9Y6Z4 181 aa9.68□□□□□ -0.86
PTCH1-226ENST00000553011 A8MWL6 223 aa9.67□□□□□ -0.86
PTCH1-226ENST00000553011 LINC00315P59091 139 aa9.67□□□□□ -0.86
PTCH1-226ENST00000553011 CT83Q5H943 113 aa9.67□□□□□ -0.86
PTCH1-226ENST00000553011 ATP6V0E2Q8NHE4 81 aa9.67□□□□□ -0.86
PTCH1-226ENST00000553011 SMIM17P0DL12 118 aa9.66□□□□□ -0.86
PTCH1-226ENST00000553011 NTF3P20783 257 aa9.66□□□□□ -0.86
PTCH1-226ENST00000553011 RAB4BP61018 213 aa9.66□□□□□ -0.86
PTCH1-226ENST00000553011 WDR73Q6P4I2 378 aa9.66□□□□□ -0.86
PTCH1-226ENST00000553011 CNFNQ9BYD5 112 aa9.66□□□□□ -0.86
PTCH1-226ENST00000553011 KRTAP1-5Q9BYS1 174 aa9.66□□□□□ -0.86
PTCH1-226ENST00000553011 F5H697 171 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 SIVA1O15304 175 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 MGPP08493 103 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 EVI2AP22794 236 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 TIRAPP58753 221 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 TWIST1Q15672 202 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 WFDC10BQ8IUB3 73 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 C15orf54Q8N8G6 183 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 PGLYRP4Q96LB8 373 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 V9GYV3 84 aa9.65□□□□□ -0.86
PTCH1-226ENST00000553011 DNAH2Q9P225 4427 aa9.64□□□□□ -0.87
PTCH1-226ENST00000553011 TRBV10-1A0A0K0K1A3 114 aa9.64□□□□□ -0.87
PTCH1-226ENST00000553011 TRGC1P0CF51 173 aa9.64□□□□□ -0.87
PTCH1-226ENST00000553011 OR10G8Q8NGN5 311 aa9.64□□□□□ -0.87
PTCH1-226ENST00000553011 TSKUQ8WUA8 353 aa9.64□□□□□ -0.87
PTCH1-226ENST00000553011 GTSF1LQ9H1H1 148 aa9.64□□□□□ -0.87
PTCH1-226ENST00000553011 RTL8CO15255 209 aa9.63□□□□□ -0.87
PTCH1-226ENST00000553011 FOXA3P55318 350 aaPredicted RBP9.63□□□□□ -0.87
PTCH1-226ENST00000553011 NEXN-AS1Q8NBZ9 246 aa9.63□□□□□ -0.87
PTCH1-226ENST00000553011 DPH3P1Q9H4G8 78 aa9.63□□□□□ -0.87
PTCH1-226ENST00000553011 DNAH17Q9UFH2 4485 aa9.63□□□□□ -0.87
PTCH1-226ENST00000553011 HIGD1CA8MV81 97 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 UBE2D3P61077 147 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 UBE2D2P62837 147 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 RPL36AP83881 106 aaKnown RBP9.62□□□□□ -0.87
PTCH1-226ENST00000553011 TTC32Q5I0X7 151 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 C1orf134Q5TEV5 83 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 SUMO4Q6EEV6 95 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 RPL36ALQ969Q0 106 aaKnown RBP9.62□□□□□ -0.87
PTCH1-226ENST00000553011 GFRA4Q9GZZ7 299 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 FRAS1Q86XX4 4008 aa9.62□□□□□ -0.87
PTCH1-226ENST00000553011 TRBV7-3A0A075B6L6 115 aa9.61□□□□□ -0.87
PTCH1-226ENST00000553011 OR10J3Q5JRS4 329 aa9.61□□□□□ -0.87
PTCH1-226ENST00000553011 LELP1Q5T871 98 aa9.61□□□□□ -0.87
PTCH1-226ENST00000553011 TRAV8-6A0A0B4J262 113 aa9.6□□□□□ -0.87
PTCH1-226ENST00000553011 FAM231BA6NCW3 169 aa9.6□□□□□ -0.87
PTCH1-226ENST00000553011 M0QY20 66 aa9.6□□□□□ -0.87
PTCH1-226ENST00000553011 C6orf223Q8N319 242 aa9.6□□□□□ -0.87
PTCH1-226ENST00000553011 EPPK1P58107 5090 aaKnown RBP9.6□□□□□ -0.87
PTCH1-226ENST00000553011 IGHV3-38A0A0C4DH36 116 aa9.59□□□□□ -0.87
PTCH1-226ENST00000553011 A0A1B0GUT8 65 aa9.59□□□□□ -0.87
PTCH1-226ENST00000553011 DNAH10OSP0CZ25 163 aa9.59□□□□□ -0.87
PTCH1-226ENST00000553011 NUP35Q8NFH5 326 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms