RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 SCAPERQ9BY12 1400 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 PXDNLA1KZ92 1463 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 ZGRF1Q86YA3 2104 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 KIAA0100Q14667 2235 aaKnown RBP2.83□□□□□ -1.96
PRKDC-209ENST00000540819 TNS1Q9HBL0 1735 aaKnown RBP2.82□□□□□ -1.96
PRKDC-209ENST00000540819 PTPRDP23468 1912 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 MDC1Q14676 2089 aaKnown RBP2.82□□□□□ -1.96
PRKDC-209ENST00000540819 TRGV4A0A0C4DH28 118 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 H3BRM9 83 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 IGKCP01834 107 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 CCKP06307 115 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 PRB4P10163 310 aaPredicted RBP2.82□□□□□ -1.96
PRKDC-209ENST00000540819 BAZ2BQ9UIF8 2168 aaKnown RBP2.82□□□□□ -1.96
PRKDC-209ENST00000540819 UNC13CQ8NB66 2214 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 SBF2Q86WG5 1849 aa2.82□□□□□ -1.96
PRKDC-209ENST00000540819 TCHHQ07283 1943 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 A0A0J9YY99 117 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 TRBV10-1A0A0K0K1A3 114 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 GNGT2O14610 69 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 C15orf53Q8NAA6 179 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 NWD2Q9ULI1 1742 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 FREM1Q5H8C1 2179 aa2.81□□□□□ -1.96
PRKDC-209ENST00000540819 ALPK2Q86TB3 2170 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 ARAP2Q8WZ64 1704 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 SHROOM2Q13796 1616 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 TRAV13-2A0A0B4J235 113 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 CCL8P80075 99 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 C10orf55Q5SWW7 151 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 CSAG1Q6PB30 78 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 DMAC1Q96GE9 116 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 PRO0461Q9UI25 63 aa2.8□□□□□ -1.96
PRKDC-209ENST00000540819 PARP14Q460N5 1801 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 CHD1O14646 1710 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 PLEKHH2Q8IVE3 1493 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 FN1P02751 2386 aaKnown RBP2.79□□□□□ -1.96
PRKDC-209ENST00000540819 TRBV6-4A0A1B0GX49 114 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 NUPR1O60356 82 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 IGLV3-19P01714 112 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 RNASE2P10153 161 aaKnown RBP2.79□□□□□ -1.96
PRKDC-209ENST00000540819 ASIPP42127 132 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 KRTDAPP60985 99 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 LINC00304Q8N9R0 145 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 SPTSSBQ8NFR3 76 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 MYOZ3Q8TDC0 251 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 TTTY12Q9BZ98 90 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 CYP4F30PQ9H0H9 118 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 NPVFQ9HCQ7 196 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 BET1LQ9NYM9 111 aa2.79□□□□□ -1.96
PRKDC-209ENST00000540819 MYO18AQ92614 2054 aaKnown RBP2.78□□□□□ -1.96
PRKDC-209ENST00000540819 TANC1Q9C0D5 1861 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 NUPR2A6NF83 97 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 HCG22E2RYF7 251 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 GYPAP02724 150 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 RNASE3P12724 160 aaKnown RBP2.78□□□□□ -1.96
PRKDC-209ENST00000540819 HCP5Q6MZN7 132 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 IFI27L1Q96BM0 104 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 PMCHL2Q9BQD1 86 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 CDC42SE1Q9NRR8 79 aa2.78□□□□□ -1.96
PRKDC-209ENST00000540819 MRPL36Q9P0J6 103 aaKnown RBP2.78□□□□□ -1.96
PRKDC-209ENST00000540819 MARF1Q9Y4F3 1742 aaKnown RBP2.78□□□□□ -1.96
PRKDC-209ENST00000540819 ZNF142P52746 1687 aaPredicted RBP2.78□□□□□ -1.96
PRKDC-209ENST00000540819 ANKRD36BQ8N2N9 1353 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 CR1P17927 2039 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 H3BQF6 201 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 IGHV3-30P01768 117 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 IGHV3-30-5P0DP03 117 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 C10orf82Q8WW14 230 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 ODF3Q96PU9 254 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 TXNDC17Q9BRA2 123 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 KLK9Q9UKQ9 250 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 LAMC3Q9Y6N6 1575 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 DOCK2Q92608 1830 aa2.77□□□□□ -1.97
PRKDC-209ENST00000540819 TRAV12-3A0A0B4J271 114 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 hADV29S1A0JD25 119 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 NAP1L6A6NFF2 107 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 SIX6O95475 246 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 LINC00474Q9P2X8 69 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 PRDM15P57071 1507 aaPredicted RBP2.76□□□□□ -1.97
PRKDC-209ENST00000540819 RRBP1Q9P2E9 1410 aaKnown RBP2.76□□□□□ -1.97
PRKDC-209ENST00000540819 TET3O43151 1660 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 DOCK10Q96BY6 2186 aa2.76□□□□□ -1.97
PRKDC-209ENST00000540819 PPLO60437 1756 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 RGPD4Q7Z3J3 1758 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 ATOX1O00244 68 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 TFF1P04155 84 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 GNG11P61952 73 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 ZNF818PQ6ZRF7 136 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 KRTAP5-5Q701N2 237 aaPredicted RBP2.75□□□□□ -1.97
PRKDC-209ENST00000540819 TSLPQ969D9 159 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 ARFGEF3Q5TH69 2177 aa2.75□□□□□ -1.97
PRKDC-209ENST00000540819 TRBV7-1A0A0A6YYK4 115 aa2.74□□□□□ -1.97
PRKDC-209ENST00000540819 JMJD7-PLA2G4BH0Y9G9 81 aa2.74□□□□□ -1.97
PRKDC-209ENST00000540819 PPYP01298 95 aa2.74□□□□□ -1.97
PRKDC-209ENST00000540819 LIMD2Q9BT23 127 aa2.74□□□□□ -1.97
PRKDC-209ENST00000540819 SPAG17Q6Q759 2223 aa2.74□□□□□ -1.97
PRKDC-209ENST00000540819 UACAQ9BZF9 1416 aa2.74□□□□□ -1.97
PRKDC-209ENST00000540819 GOLGA3Q08378 1498 aa2.73□□□□□ -1.97
PRKDC-209ENST00000540819 CDK12Q9NYV4 1490 aaPredicted RBP2.73□□□□□ -1.97
PRKDC-209ENST00000540819 IGKV3-7A0A075B6H7 116 aa2.73□□□□□ -1.97
PRKDC-209ENST00000540819 TRAV23DV6A0A075B6W5 121 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms