RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TP53TG1Q9Y2A0 90 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 ICOSQ9Y6W8 199 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 ABCA1O95477 2261 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 TRAV12-2A0A075B6T6 113 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 IQCF6A8MYZ5 107 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 LST1O00453 97 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 WT1-ASQ06250 92 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 ZNF826PQ6ZT77 177 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 C9orf139Q6ZV77 190 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 MUSTN1Q8IVN3 82 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 DCANP1Q8TF63 244 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 BRK1Q8WUW1 75 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 TOMM6Q96B49 74 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-214ENST00000540539 SAA1P0DJI8 122 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-214ENST00000540539 MAGEA5P43359 124 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 CXorf67Q86X51 503 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-214ENST00000540539 TMEM14CQ9P0S9 112 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 EPG5Q9HCE0 2579 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 CACNA1BQ00975 2339 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 TRBV19A0A075B6N1 114 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 TRGV3P03979 118 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 CD40P25942 277 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 UBE2E1P51965 193 aa7.17□□□□□ -1.26
CLIP1-214ENST00000540539 RP1L1Q8IWN7 2480 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-214ENST00000540539 SUB1P53999 127 aaKnown RBP eCLIP7.16□□□□□ -1.26
CLIP1-214ENST00000540539 ERCC8Q13216 396 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 FP248Q71RG6 208 aaPredicted RBP7.16□□□□□ -1.26
CLIP1-214ENST00000540539 PSMG3-AS1Q96PY0 264 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 TIMM21Q9BVV7 248 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 IGLV4-69A0A075B6H9 119 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 TRAV8-3A0A0A6YYJ7 113 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 ZNF80P51504 273 aaPredicted RBP7.16□□□□□ -1.26
CLIP1-214ENST00000540539 B3GALT5-AS1P59052 145 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 FAM19A1Q7Z5A9 133 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 FAM223AQ8IWN6 122 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 FAM216BQ8N7L0 139 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 BSNQ9UPA5 3926 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 NACAE9PAV3 2078 aa7.16□□□□□ -1.26
CLIP1-214ENST00000540539 NDUFC2-KCTD14E9PQ53 114 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 CXCL13O43927 109 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 PRSS2P07478 247 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 C10orf55Q5SWW7 151 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 C20orf173Q96LM9 149 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 SMIM2Q9BVW6 85 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 DEFB127Q9H1M4 99 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 SERP1Q9Y6X1 66 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 DSCAMO60469 2012 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 COX6CP09669 75 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 LYZP61626 148 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 TMEM200BQ69YZ2 307 aa7.15□□□□□ -1.26
CLIP1-214ENST00000540539 PRRC2AP48634 2157 aaKnown RBP7.15□□□□□ -1.27
CLIP1-214ENST00000540539 CGB1A6NKQ9 187 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 NDUFC2O95298 119 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 SPENQ96T58 3664 aaKnown RBP7.14□□□□□ -1.27
CLIP1-214ENST00000540539 VMA21Q3ZAQ7 101 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 ORMDL2Q53FV1 153 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 A0A087WVE0 104 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 TRGV5A0A0B4J1U4 118 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 USP17L23D6RBM5 183 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 C2orf66Q6UXQ4 117 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 GGNQ86UU5 652 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 Q8NA96 180 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 TMEM243Q9BU79 118 aa7.14□□□□□ -1.27
CLIP1-214ENST00000540539 IGSF10Q6WRI0 2623 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 IGHV3-21A0A0B4J1V1 117 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 KALRNO60229 2985 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 LGALS3P17931 250 aaKnown RBP7.13□□□□□ -1.27
CLIP1-214ENST00000540539 CIRBPQ14011 172 aaKnown RBP7.13□□□□□ -1.27
CLIP1-214ENST00000540539 COX8CQ7Z4L0 72 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 ZNF491Q8N8L2 437 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 Q8TAT8 98 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 DYNLRB1Q9NP97 96 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 COL6A6A6NMZ7 2263 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 Q6ZSV7 163 aa7.13□□□□□ -1.27
CLIP1-214ENST00000540539 NBASA2RRP1 2371 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 ZFYVE26Q68DK2 2539 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 IGKV2-40A0A087WW87 121 aaPredicted RBP7.12□□□□□ -1.27
CLIP1-214ENST00000540539 FAM223BA6NKX1 122 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 I3L3M4 83 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 IGKV2D-40P01614 121 aaPredicted RBP7.12□□□□□ -1.27
CLIP1-214ENST00000540539 GFRALQ6UXV0 394 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 LYPD1Q8N2G4 141 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 SPRR3Q9UBC9 169 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 PLGLAQ15195 96 aa7.12□□□□□ -1.27
CLIP1-214ENST00000540539 SMIM26A0A096LP01 95 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 PAPPA-AS1Q5QFB9 102 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 DAND5Q8N907 189 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 RETNQ9HD89 108 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 IGHV3OR16-10A0A075B7F0 116 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 IGKV3D-7A0A0C4DH55 119 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 MRPL33O75394 65 aaKnown RBP7.11□□□□□ -1.27
CLIP1-214ENST00000540539 HCP5Q6MZN7 132 aa7.11□□□□□ -1.27
CLIP1-214ENST00000540539 RNASE6Q93091 150 aaKnown RBP7.11□□□□□ -1.27
CLIP1-214ENST00000540539 TSHBP01222 138 aa7.1□□□□□ -1.27
CLIP1-214ENST00000540539 DLX1P56177 255 aa7.1□□□□□ -1.27
CLIP1-214ENST00000540539 TIRAPP58753 221 aa7.1□□□□□ -1.27
CLIP1-214ENST00000540539 DAZ2Q13117 558 aaKnown RBP7.1□□□□□ -1.27
CLIP1-214ENST00000540539 DAZ4Q86SG3 579 aaKnown RBP7.1□□□□□ -1.27
CLIP1-214ENST00000540539 SLC50A1Q9BRV3 221 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms