RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SFRP2Q96HF1 295 aa7.82□□□□□ -1.16
RTN3-209ENST00000538995 TMSB15BA0A087X1C1 80 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 RPL35P42766 123 aaKnown RBP7.81□□□□□ -1.16
RTN3-209ENST00000538995 KRTAP10-2P60368 255 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 CDPF1Q6NVV7 123 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 Q6ZNX1 250 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 SLC51BQ86UW2 128 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 SAMD10Q9BYL1 202 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 JPT2Q9H910 190 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 GNG13Q9P2W3 67 aa7.81□□□□□ -1.16
RTN3-209ENST00000538995 APOBP04114 4563 aaKnown RBP7.81□□□□□ -1.16
RTN3-209ENST00000538995 A0A087WWC5 75 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 TRBV10-1A0A0K0K1A3 114 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 GAGE12JA6NER3 117 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 IBA57-AS1B1ANH7 110 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 M0R381 172 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 GAGE1Q13065 139 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 GAGE4Q13068 117 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 GAGE5Q13069 117 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 LAGE3Q14657 143 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 GAGE13Q4V321 117 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 LCE2AQ5TA79 106 aaPredicted RBP7.8□□□□□ -1.16
RTN3-209ENST00000538995 FAM74A4Q5TZK3 123 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 SMIM12Q96EX1 92 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 PGPEP1Q9NXJ5 209 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 TNFRSF18Q9Y5U5 241 aa7.8□□□□□ -1.16
RTN3-209ENST00000538995 A0A087WTM6 91 aa7.79□□□□□ -1.16
RTN3-209ENST00000538995 SNAI2O43623 268 aa7.79□□□□□ -1.16
RTN3-209ENST00000538995 PDE6DO43924 150 aa7.79□□□□□ -1.16
RTN3-209ENST00000538995 IFNA1P01562 189 aa7.79□□□□□ -1.16
RTN3-209ENST00000538995 OR5AL1P0C617 328 aa7.79□□□□□ -1.16
RTN3-209ENST00000538995 CCL20P78556 96 aa7.79□□□□□ -1.16
RTN3-209ENST00000538995 C14orf178Q8N769 122 aaPredicted RBP7.79□□□□□ -1.16
RTN3-209ENST00000538995 SSBP4Q9BWG4 385 aaPredicted RBP7.79□□□□□ -1.16
RTN3-209ENST00000538995 A0A087WWL8 130 aa7.78□□□□□ -1.16
RTN3-209ENST00000538995 TAGLN2P37802 199 aaKnown RBP7.78□□□□□ -1.16
RTN3-209ENST00000538995 RPL19P84098 196 aaKnown RBP7.78□□□□□ -1.16
RTN3-209ENST00000538995 MEF2BQ02080 365 aaPredicted RBP7.78□□□□□ -1.16
RTN3-209ENST00000538995 PRR27Q6MZM9 219 aa7.78□□□□□ -1.16
RTN3-209ENST00000538995 AKAP14Q86UN6 197 aa7.78□□□□□ -1.16
RTN3-209ENST00000538995 BCL2P10415 239 aa7.77□□□□□ -1.17
RTN3-209ENST00000538995 CENPWQ5EE01 88 aa7.77□□□□□ -1.17
RTN3-209ENST00000538995 OR10AG1Q8NH19 301 aa7.77□□□□□ -1.17
RTN3-209ENST00000538995 DERL1Q9BUN8 251 aa7.77□□□□□ -1.17
RTN3-209ENST00000538995 PSCAO43653 123 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 IGHV3-30P01768 117 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 IGHV3-33P01772 117 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 IGHV3-30-3P0DP02 117 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 IGHV3-30-5P0DP03 117 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 RAB4BP61018 213 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 RPL36AP83881 106 aaKnown RBP7.76□□□□□ -1.17
RTN3-209ENST00000538995 TOR2AQ5JU69 321 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 C9orf62Q8N4C0 152 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 OR10G8Q8NGN5 311 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 RPL36ALQ969Q0 106 aaKnown RBP7.76□□□□□ -1.17
RTN3-209ENST00000538995 Q9UF83 564 aa7.76□□□□□ -1.17
RTN3-209ENST00000538995 TRBV7-3A0A075B6L6 115 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 IGLV2-8P01709 118 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 GNG4P50150 75 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 RPS20P60866 119 aaKnown RBP7.75□□□□□ -1.17
RTN3-209ENST00000538995 SPANXN1Q5VSR9 72 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 AP1S3Q96PC3 154 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 CHCHD7Q9BUK0 85 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 TM2D2Q9BX73 214 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 BIN3Q9NQY0 253 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 VAX2Q9UIW0 290 aa7.75□□□□□ -1.17
RTN3-209ENST00000538995 TRAV8-3A0A0A6YYJ7 113 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 XKRY2A2RUG3 117 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 C19orf71A6NCJ1 209 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 UBE2D3P61077 147 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 UBE2D2P62837 147 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 ZNF56Q15929 161 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 NTN5Q8WTR8 489 aaPredicted RBP7.74□□□□□ -1.17
RTN3-209ENST00000538995 DAZAP1Q96EP5 407 aaKnown RBP7.74□□□□□ -1.17
RTN3-209ENST00000538995 Q9HAA7 133 aa7.74□□□□□ -1.17
RTN3-209ENST00000538995 LRCOL1A6NCL2 159 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 IGLC6P0CF74 106 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 NIT1Q86X76 327 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 MAPKAPK5-AS1Q8N8E1 139 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 FER1L6-AS1Q8NA97 138 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 OR2D3Q8NGH3 330 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 MED9Q9NWA0 146 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 URGCP-MRPS24S4R325 110 aa7.73□□□□□ -1.17
RTN3-209ENST00000538995 TRBV20OR9-2A0A075B6H5 130 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 RAB19A4D1S5 217 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 P01737 135 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 SMIM17P0DL12 118 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 CACNG7P62955 275 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 Q8N1X5 172 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 Q8N3U1 123 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.72□□□□□ -1.17
RTN3-209ENST00000538995 NEXN-AS1Q8NBZ9 246 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 COX11Q9Y6N1 276 aa7.72□□□□□ -1.17
RTN3-209ENST00000538995 hCG_2014768A0A024R1R8 64 aa7.71□□□□□ -1.18
RTN3-209ENST00000538995 F2Z2F3 143 aa7.71□□□□□ -1.18
RTN3-209ENST00000538995 BLOC1S1P78537 153 aa7.71□□□□□ -1.18
RTN3-209ENST00000538995 ELOBQ15370 118 aa7.71□□□□□ -1.18
RTN3-209ENST00000538995 KCNIP4Q6PIL6 250 aa7.71□□□□□ -1.18
RTN3-209ENST00000538995 DAZ4Q86SG3 579 aaKnown RBP7.71□□□□□ -1.18
RTN3-209ENST00000538995 RMI2Q96E14 147 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms