RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 CASC2Q6XLA1 102 aa1.34□□□□□ -2.19
PRKDC-208ENST00000536710 ZCCHC23Q6ZST2 131 aa1.34□□□□□ -2.19
PRKDC-208ENST00000536710 LINC00269Q8N2A0 174 aa1.34□□□□□ -2.19
PRKDC-208ENST00000536710 OR9Q1Q8NGQ5 310 aa1.34□□□□□ -2.19
PRKDC-208ENST00000536710 CCL4L1Q8NHW4 92 aa1.34□□□□□ -2.19
PRKDC-208ENST00000536710 CLEC2BQ92478 149 aa1.34□□□□□ -2.19
PRKDC-208ENST00000536710 DNAH14Q0VDD8 3507 aa1.34□□□□□ -2.2
PRKDC-208ENST00000536710 TET1Q8NFU7 2136 aa1.34□□□□□ -2.2
PRKDC-208ENST00000536710 TNRC6AQ8NDV7 1962 aaKnown RBP1.34□□□□□ -2.2
PRKDC-208ENST00000536710 PLIN4Q96Q06 1357 aa1.34□□□□□ -2.2
PRKDC-208ENST00000536710 PLXNA4Q9HCM2 1894 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 ROS1P08922 2347 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 WDR87Q6ZQQ6 2873 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 TRBV27A0A0K0K1C4 114 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 TSTD3H0UI37 97 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 H3BMG7 143 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 IGLV3-1P01715 115 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 B2MP61769 119 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 NEDD8Q15843 81 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 TMEM35BQ8NCS4 154 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 LAMA1P25391 3075 aa1.33□□□□□ -2.2
PRKDC-208ENST00000536710 GNG14A0A1W2PPG7 69 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 DEFB123Q8N688 67 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 SKA2Q8WVK7 121 aaPredicted RBP1.32□□□□□ -2.2
PRKDC-208ENST00000536710 CCDC115Q96NT0 180 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 LIMD2Q9BT23 127 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 FKBP11Q9NYL4 201 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 NDUFAF1Q9Y375 327 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 ZFHX4Q86UP3 3567 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 FANCMQ8IYD8 2048 aa1.32□□□□□ -2.2
PRKDC-208ENST00000536710 TENM1Q9UKZ4 2725 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 TTC28Q96AY4 2481 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 LOC107984156A0A0G2JMH3 177 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 IGHV3-33P01772 117 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 CD14P08571 375 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 OCIAD2Q56VL3 154 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 LINC00299Q6ZSB3 139 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 ARL17AQ8IVW1 177 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 BOKQ9UMX3 212 aaPredicted RBP1.31□□□□□ -2.2
PRKDC-208ENST00000536710 NCOR1O75376 2440 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 SPEGQ15772 3267 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 PATJQ8NI35 1801 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 ASPMQ8IZT6 3477 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 ZNF292O60281 2723 aa1.31□□□□□ -2.2
PRKDC-208ENST00000536710 MYH9P35579 1960 aaKnown RBP1.3□□□□□ -2.2
PRKDC-208ENST00000536710 LOC107984640A0A0U1RRK4 108 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 A0A1W2PPM0 123 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 M0QZK8 103 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 SAA1P0DJI8 122 aaPredicted RBP1.3□□□□□ -2.2
PRKDC-208ENST00000536710 SRP9P49458 86 aaKnown RBP1.3□□□□□ -2.2
PRKDC-208ENST00000536710 GLIPR1L1Q6UWM5 242 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 LINC00575Q6W349 94 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 OR10AC1Q8NH08 325 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 BRK1Q8WUW1 75 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 Q9Y3F1 56 aa1.3□□□□□ -2.2
PRKDC-208ENST00000536710 PDCD11Q14690 1871 aaKnown RBP1.3□□□□□ -2.2
PRKDC-208ENST00000536710 HEATR1Q9H583 2144 aaKnown RBP1.3□□□□□ -2.2
PRKDC-208ENST00000536710 ZZEF1O43149 2961 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 CFAP47Q6ZTR5 3102 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 LOC400499M0QZD8 3231 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 KIAA1549LQ6ZVL6 1849 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 NBEAQ8NFP9 2946 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.29□□□□□ -2.2
PRKDC-208ENST00000536710 TRBV7-6A0A0J9YX20 115 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 LOC107986453A0A1B0GWG9 222 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 CRYGSP22914 178 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 FOXA3P55318 350 aaPredicted RBP1.29□□□□□ -2.2
PRKDC-208ENST00000536710 ALX1Q15699 326 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 MORN4Q8NDC4 146 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 AP1S3Q96PC3 154 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 CBLN4Q9NTU7 201 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 FCGBPQ9Y6R7 5405 aaPredicted RBP1.29□□□□□ -2.2
PRKDC-208ENST00000536710 FRYQ5TBA9 3013 aa1.29□□□□□ -2.2
PRKDC-208ENST00000536710 FREM2Q5SZK8 3169 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 A0A0D9SFI3 127 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 PRORSD1PA6NEY8 169 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 RPS3P23396 243 aaKnown RBP eCLIP1.28□□□□□ -2.2
PRKDC-208ENST00000536710 FXYD4P59646 89 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 SBSPONQ8IVN8 264 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 C5orf17Q8NAS9 161 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 CIB3Q96Q77 187 aaPredicted RBP1.28□□□□□ -2.2
PRKDC-208ENST00000536710 TSC2P49815 1807 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 ANK1P16157 1881 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 EML5Q05BV3 1969 aa1.28□□□□□ -2.2
PRKDC-208ENST00000536710 CACNA1AO00555 2505 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 MYLKQ15746 1914 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 NUP210Q8TEM1 1887 aaPredicted RBP1.27□□□□□ -2.21
PRKDC-208ENST00000536710 CCDC171Q6TFL3 1326 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 BBIP1A8MTZ0 92 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 LSM3P62310 102 aaKnown RBP1.27□□□□□ -2.21
PRKDC-208ENST00000536710 NABP2Q9BQ15 211 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 HSPB11Q9Y547 144 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 DMXL2Q8TDJ6 3036 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 MYO7AQ13402 2215 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 LAMA5O15230 3695 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 PTPRDP23468 1912 aa1.27□□□□□ -2.21
PRKDC-208ENST00000536710 HELZP42694 1942 aaKnown RBP1.27□□□□□ -2.21
PRKDC-208ENST00000536710 ITPR1Q14643 2758 aa1.26□□□□□ -2.21
PRKDC-208ENST00000536710 SPTBN4Q9H254 2564 aa1.26□□□□□ -2.21
PRKDC-208ENST00000536710 PIEZO1Q92508 2521 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms