RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 IGHV3-30P01768 117 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 IGHV3-33P01772 117 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 IGHV3-30-3P0DP02 117 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 IGHV3-30-5P0DP03 117 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 RAB5CP51148 216 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 C14orf178Q8N769 122 aaPredicted RBP8.97□□□□□ -0.97
VPS28-211ENST00000530790 SFRP2Q96HF1 295 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 GNG13Q9P2W3 67 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 LRP1BQ9NZR2 4599 aa8.97□□□□□ -0.97
VPS28-211ENST00000530790 IBA57-AS1B1ANH7 110 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 TEX46H3BTG2 121 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 CXCL1P09341 107 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 PRR27Q6MZM9 219 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 TCTE3Q8IZS6 198 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 Q9HAA7 133 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 HSPG2P98160 4391 aa8.96□□□□□ -0.98
VPS28-211ENST00000530790 A0A087WWC5 75 aa8.95□□□□□ -0.98
VPS28-211ENST00000530790 TRAV1-1A0A0B4J248 108 aa8.95□□□□□ -0.98
VPS28-211ENST00000530790 FUSP35637 526 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS28-211ENST00000530790 RPL35P42766 123 aaKnown RBP8.95□□□□□ -0.98
VPS28-211ENST00000530790 RPL19P84098 196 aaKnown RBP8.95□□□□□ -0.98
VPS28-211ENST00000530790 LAGE3Q14657 143 aa8.95□□□□□ -0.98
VPS28-211ENST00000530790 MLST8Q9BVC4 326 aa8.95□□□□□ -0.98
VPS28-211ENST00000530790 Q6ZNX1 250 aa8.94□□□□□ -0.98
VPS28-211ENST00000530790 C11orf52Q96A22 123 aa8.94□□□□□ -0.98
VPS28-211ENST00000530790 Q9UF83 564 aa8.94□□□□□ -0.98
VPS28-211ENST00000530790 TRBV10-1A0A0K0K1A3 114 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 A0A1B0GVG6 124 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 IFNA1P01562 189 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 SULT1A2P50226 295 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 CCL20P78556 96 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 OR10AG1Q8NH19 301 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 DERL1Q9BUN8 251 aa8.93□□□□□ -0.98
VPS28-211ENST00000530790 SNAI2O43623 268 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 C1QBP02746 253 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 RPL36AP83881 106 aaKnown RBP8.92□□□□□ -0.98
VPS28-211ENST00000530790 ZNF56Q15929 161 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 CENPWQ5EE01 88 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 SPANXN1Q5VSR9 72 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 Q8N3U1 123 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 RPL36ALQ969Q0 106 aaKnown RBP8.92□□□□□ -0.98
VPS28-211ENST00000530790 KRTAP4-5Q9BYR2 181 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 URGCP-MRPS24S4R325 110 aa8.92□□□□□ -0.98
VPS28-211ENST00000530790 ABCA13Q86UQ4 5058 aa8.91□□□□□ -0.98
VPS28-211ENST00000530790 OR5AL1P0C617 328 aa8.91□□□□□ -0.98
VPS28-211ENST00000530790 MEF2BQ02080 365 aaPredicted RBP8.91□□□□□ -0.98
VPS28-211ENST00000530790 TOR2AQ5JU69 321 aa8.91□□□□□ -0.98
VPS28-211ENST00000530790 SLC51BQ86UW2 128 aa8.91□□□□□ -0.98
VPS28-211ENST00000530790 Q8N1X5 172 aa8.91□□□□□ -0.98
VPS28-211ENST00000530790 TM2D2Q9BX73 214 aa8.91□□□□□ -0.98
VPS28-211ENST00000530790 APOBP04114 4563 aaKnown RBP8.9□□□□□ -0.98
VPS28-211ENST00000530790 hCG_2014768A0A024R1R8 64 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 TRBV7-3A0A075B6L6 115 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 MUC21A0A0G2JKD1 596 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 MUC21A0A140T8X8 626 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 LRCOL1A6NCL2 159 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 PDE6DO43924 150 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 RAB4BP61018 213 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 DAZ4Q86SG3 579 aaKnown RBP8.9□□□□□ -0.98
VPS28-211ENST00000530790 SMIM12Q96EX1 92 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 AP1S3Q96PC3 154 aa8.9□□□□□ -0.98
VPS28-211ENST00000530790 SSBP4Q9BWG4 385 aaPredicted RBP8.9□□□□□ -0.98
VPS28-211ENST00000530790 DAZ3Q9NR90 486 aaKnown RBP8.9□□□□□ -0.98
VPS28-211ENST00000530790 IGLV5-52A0A0A0MRZ9 124 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 TRAV8-3A0A0A6YYJ7 113 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 BCL2P10415 239 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 GNG4P50150 75 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 UBE2D3P61077 147 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 UBE2D2P62837 147 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 KCNIP4Q6PIL6 250 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 AKAP14Q86UN6 197 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 NTN5Q8WTR8 489 aaPredicted RBP8.89□□□□□ -0.99
VPS28-211ENST00000530790 DAZAP1Q96EP5 407 aaKnown RBP8.89□□□□□ -0.99
VPS28-211ENST00000530790 DNAH5Q8TE73 4624 aa8.89□□□□□ -0.99
VPS28-211ENST00000530790 SMIM17P0DL12 118 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 GCSHP23434 173 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 RPS20P60866 119 aaKnown RBP8.88□□□□□ -0.99
VPS28-211ENST00000530790 SSTP61278 116 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 NIT1Q86X76 327 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 Q8N814 137 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.88□□□□□ -0.99
VPS28-211ENST00000530790 OR10G8Q8NGN5 311 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 TPPP3Q9BW30 176 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 MED9Q9NWA0 146 aa8.88□□□□□ -0.99
VPS28-211ENST00000530790 A0A087WX48 190 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 F5H697 171 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 IGLV2-8P01709 118 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 TAGLN2P37802 199 aaKnown RBP8.87□□□□□ -0.99
VPS28-211ENST00000530790 KRTAP10-1P60331 282 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 FER1L6-AS1Q8NA97 138 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 OR2D3Q8NGH3 330 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 RMI2Q96E14 147 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 CHCHD7Q9BUK0 85 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 VAX2Q9UIW0 290 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 COX11Q9Y6N1 276 aa8.87□□□□□ -0.99
VPS28-211ENST00000530790 XKRY2A2RUG3 117 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 RAB19A4D1S5 217 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 P01737 135 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 GZMBP10144 247 aa8.86□□□□□ -0.99
VPS28-211ENST00000530790 ELOBQ15370 118 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms