RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 U3KQK5 164 aa3.88□□□□□ -1.79
CD44-218ENST00000525469 TANC2Q9HCD6 1990 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 IGHV3OR15-7A0A075B7D8 119 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 IGKV3D-15A0A087WSY6 115 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 TRAV24A0A0B4J272 114 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 LOC107984156A0A0G2JMH3 177 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 LCE6AA0A183 80 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 TMEM30CPA0ZSE6 113 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 RBMY1BA6NDE4 496 aaKnown RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 RBMY1EA6NEQ0 496 aaKnown RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 PRSS46E5RG02 174 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 H3BMM0 161 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 LTAP01374 205 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 PRSS1P07477 247 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 RBMY1DP0C7P1 496 aaKnown RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 COX7CP15954 63 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 DUTP33316 252 aaKnown RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 UBE2D1P51668 147 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 HERVK_113P63121 156 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 KRTAP27-1Q3LI81 207 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 CASC10Q5T4H9 136 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 SUMO4Q6EEV6 95 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 ZNF497Q6ZNH5 498 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 NFE4Q86UQ8 179 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 ARL17AQ8IVW1 177 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 ANKRD29Q8N6D5 301 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 UBE2WQ96B02 151 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 LINC01587Q99440 93 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 B9D2Q9BPU9 175 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 NAA38Q9BRA0 125 aaKnown RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 PAXXQ9BUH6 204 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 AAMDCQ9H7C9 122 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 FOXA2Q9Y261 457 aaPredicted RBP3.87□□□□□ -1.79
CD44-218ENST00000525469 V9GYY9 64 aa3.87□□□□□ -1.79
CD44-218ENST00000525469 TRBV7-3A0A075B6L6 115 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 IGKV1-6A0A0C4DH72 117 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 INS-IGF2F8WCM5 200 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 K7EIL1 84 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 RS1O15537 224 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 EFNA2O43921 213 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 COX7A2P2O60397 106 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 LINC00694P0DN24 101 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 IGHV4-38-2P0DP08 117 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 VPREB1P12018 145 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 CCL8P80075 99 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 MRPS36P82909 103 aaKnown RBP3.86□□□□□ -1.79
CD44-218ENST00000525469 ZNF415Q09FC8 603 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 DEFB112Q30KQ8 113 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 GDF5OSQ5U4N7 250 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 C9orf139Q6ZV77 190 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 LINC00643Q86TS7 51 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 ZNF329Q86UD4 541 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 LYPD1Q8N2G4 141 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 TMEM86BQ8N661 226 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 DEFB108BQ8NET1 73 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 OR1L8Q8NGR8 309 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 MUC7Q8TAX7 377 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 UBALD1Q8TB05 177 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 BAALCQ8WXS3 180 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 C21orf62Q9NYP8 219 aa3.86□□□□□ -1.79
CD44-218ENST00000525469 F11RQ9Y624 299 aaKnown RBP3.86□□□□□ -1.79
CD44-218ENST00000525469 IGKV1-27A0A075B6S5 117 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 IGKV1D-43A0A0B4J1Z2 117 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 TRAV4A0A0B4J268 109 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 TRAV40A0A0B4J280 105 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 IGKV1-12A0A0C4DH73 117 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 TRBV10-2A0A0K0K1G8 114 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 C15orf61A6NNL5 157 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 H7C1H1 209 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 J3QT63 122 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 LGALS9O00182 355 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 SPINT2O43291 252 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 NDUFC2O95298 119 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 IGKV1D-12P01611 117 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 IGLV1-44P01699 117 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 FRMD6-AS1P0C7T7 363 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 IGLC6P0CF74 106 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 RPL7P18124 248 aaKnown RBP3.85□□□□□ -1.79
CD44-218ENST00000525469 INSL3P51460 131 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 SRSF9Q13242 221 aaKnown RBP eCLIP3.85□□□□□ -1.79
CD44-218ENST00000525469 C2orf83Q53S99 150 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 ZC2HC1BQ5TFG8 222 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 C10orf113Q5VZT2 155 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 FAM104BQ5XKR9 115 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 LINC00173Q6ZV60 143 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 MIR17HGQ75NE6 70 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 AAED1Q7RTV5 226 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 RNF144BQ7Z419 303 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 PCP2Q8IVA1 136 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 NTN5Q8WTR8 489 aaPredicted RBP3.85□□□□□ -1.79
CD44-218ENST00000525469 SSMEM1Q8WWF3 244 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 PLEKHB2Q96CS7 222 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 PGLYRP4Q96LB8 373 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 EDA2RQ9HAV5 297 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 PRO1854Q9UHT4 67 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 HHLA3Q9XRX5 114 aa3.85□□□□□ -1.79
CD44-218ENST00000525469 TRAV8-1A0A0A6YYK1 113 aa3.84□□□□□ -1.79
CD44-218ENST00000525469 A0A0B4J2C4 111 aa3.84□□□□□ -1.79
CD44-218ENST00000525469 PGPA6NDG6 321 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms